RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PPP2R5BQ15173 497 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 PEX26Q7Z412 305 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 CCDC63Q8NA47 563 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 BAP1Q92560 729 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 NOD2Q9HC29 1040 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 NIP7Q9Y221 180 aaKnown RBP eCLIP14.4□□□□□ -0.1
MSH6-214ENST00000616033 PNPLA7Q6ZV29 1317 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 MYH7P12883 1935 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 A6NNZ2 444 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 TMEM110-MUSTN1A8MSY1 372 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 DDAH1O94760 285 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 TNNI2P48788 182 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 ZKSCAN8Q15776 578 aaPredicted RBP14.39□□□□□ -0.11
MSH6-214ENST00000616033 ASIC2Q16515 512 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 TUBB8Q3ZCM7 444 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 DDX12PQ92771 950 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 LRRC45Q96CN5 670 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 DDR1Q08345 913 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 CAVIN4Q5BKX8 364 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 TRIM68Q6AZZ1 485 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 ZNF512BQ96KM6 892 aaPredicted RBP14.39□□□□□ -0.11
MSH6-214ENST00000616033 RIOK1Q9BRS2 568 aaKnown RBP14.39□□□□□ -0.11
MSH6-214ENST00000616033 PLA2G12BQ9BX93 195 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 FGFBP2Q9BYJ0 223 aa14.39□□□□□ -0.11
MSH6-214ENST00000616033 CHORDC1Q9UHD1 332 aaPredicted RBP14.39□□□□□ -0.11
MSH6-214ENST00000616033 NOC2LQ9Y3T9 749 aaKnown RBP14.39□□□□□ -0.11
MSH6-214ENST00000616033 FOXO6A8MYZ6 492 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 TRAPPC3O43617 180 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 SHBGP04278 402 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 THEMIS2Q5TEJ8 643 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 RUFY4Q6ZNE9 571 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 DNAJC17Q9NVM6 304 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 SPDYE3A6NKU9 549 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 CYTH3O43739 400 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 MMEP08473 750 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 CHN1P15882 459 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 GCFC2P16383 781 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 PRLRP16471 622 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 TRIM28Q13263 835 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 GLE1Q53GS7 698 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 HGSNATQ68CP4 663 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 KCNK18Q7Z418 384 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 GLG1Q92896 1179 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 COA7Q96BR5 231 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 RSRC1Q96IZ7 334 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 C8orf37Q96NL8 207 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 DCP1AQ9NPI6 582 aaPredicted RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 SNX24Q9Y343 169 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 TDP2O95551 362 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 GJB7Q6PEY0 223 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 FMNL3Q8IVF7 1028 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 ZNF444Q8N0Y2 327 aaPredicted RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 LARP4BQ92615 738 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 SLC4A9Q96Q91 983 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 MTFR1LQ9H019 292 aa14.38□□□□□ -0.11
MSH6-214ENST00000616033 THRAP3Q9Y2W1 955 aaKnown RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 FRMPD2Q68DX3 1309 aaPredicted RBP14.38□□□□□ -0.11
MSH6-214ENST00000616033 KLRF2D3W0D1 207 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 KCNQ2O43526 872 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 SLC9A1P19634 815 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 SSR1P43307 286 aaKnown RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 NONOQ15233 471 aaKnown RBP eCLIP14.37□□□□□ -0.11
MSH6-214ENST00000616033 METTL13Q8N6R0 699 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 ANKRD42Q8N9B4 389 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 CCDC197Q8NCU1 140 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 U2AF1L4Q8WU68 220 aaKnown RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 PRMT1Q99873 361 aaKnown RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 CRNKL1Q9BZJ0 848 aaKnown RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 NR2E1Q9Y466 385 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 ATRNO75882 1429 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 TRPM3Q9HCF6 1732 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 COL5A2P05997 1499 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 A8MUI8 341 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 DIAPH2O60879 1101 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 FGGP02679 453 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 MECOMQ03112 1051 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 PTK2Q05397 1052 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 CCDC152Q4G0S7 254 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 HERC4Q5GLZ8 1057 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 PPP4R3AQ6IN85 833 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 INPP4AQ96PE3 977 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 CCSER1Q9C0I3 900 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 SPATS2LQ9NUQ6 558 aaKnown RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 ARPP21Q9UBL0 812 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 A0A1W2PQJ5 194 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 SERPING1P05155 500 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 NAB2Q15742 525 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 GRIPAP1Q4V328 841 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 ANKS1AQ92625 1134 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 PSMD1Q99460 953 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 AZI2Q9H6S1 392 aa14.37□□□□□ -0.11
MSH6-214ENST00000616033 ACTR5Q9H9F9 607 aaPredicted RBP14.37□□□□□ -0.11
MSH6-214ENST00000616033 TRIM37O94972 964 aa14.36□□□□□ -0.11
MSH6-214ENST00000616033 IFI35P80217 286 aaPredicted RBP14.36□□□□□ -0.11
MSH6-214ENST00000616033 DDB1Q16531 1140 aa14.36□□□□□ -0.11
MSH6-214ENST00000616033 CALCRLQ16602 461 aa14.36□□□□□ -0.11
MSH6-214ENST00000616033 FAM98CQ17RN3 349 aaKnown RBP14.36□□□□□ -0.11
MSH6-214ENST00000616033 UBAP2Q5T6F2 1119 aaKnown RBP14.36□□□□□ -0.11
MSH6-214ENST00000616033 MEI1Q5TIA1 1274 aa14.36□□□□□ -0.11
MSH6-214ENST00000616033 LRRC34Q8IZ02 419 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms