RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 DDX25Q9UHL0 483 aaKnown RBP16.33■□□□□ 0.2
USE1-210ENST00000601662 TRIM43BA6NCK2 446 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 TBX3O15119 743 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 SPTLC2O15270 562 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 GRIN2DO15399 1336 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 EDIL3O43854 480 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 NEMFO60524 1076 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 PPP6R2O75170 966 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 MMP3P08254 477 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 CDK7P50613 346 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 SETQ01105 290 aaPredicted RBP16.32■□□□□ 0.2
USE1-210ENST00000601662 PTGDRQ13258 359 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 FAM47CQ5HY64 1035 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 ARL6IP4Q66PJ3 421 aaKnown RBP16.32■□□□□ 0.2
USE1-210ENST00000601662 NLRX1Q86UT6 975 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 LEO1Q8WVC0 666 aaPredicted RBP16.32■□□□□ 0.2
USE1-210ENST00000601662 TRIM43Q96BQ3 446 aaPredicted RBP16.32■□□□□ 0.2
USE1-210ENST00000601662 CDHR1Q96JP9 859 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 BCAS3Q9H6U6 928 aa16.32■□□□□ 0.2
USE1-210ENST00000601662 SPATA31C2B4DYI2 1134 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 MEIS1O00470 390 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 TLR3O15455 904 aaKnown RBP16.31■□□□□ 0.2
USE1-210ENST00000601662 MARCH6O60337 910 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 KPNA6O60684 536 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 TGFB3P10600 412 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 UBA1P22314 1058 aaKnown RBP16.31■□□□□ 0.2
USE1-210ENST00000601662 PRPHP41219 470 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 ATP2C1P98194 919 aaPredicted RBP16.31■□□□□ 0.2
USE1-210ENST00000601662 SP4Q02446 784 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 FAAP100Q0VG06 881 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 NBR1Q14596 966 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 PTPAQ15257 358 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 PRR16Q569H4 304 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 CELF3Q5SZQ8 465 aaKnown RBP16.31■□□□□ 0.2
USE1-210ENST00000601662 ANKRD33Q7Z3H0 272 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 PLA2G4DQ86XP0 818 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 SLFN12Q8IYM2 578 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 FAM20AQ96MK3 541 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 SPATA33Q96N06 139 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 TOX2Q96NM4 488 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 INPP4AQ96PE3 977 aaPredicted RBP16.31■□□□□ 0.2
USE1-210ENST00000601662 GDF15Q99988 308 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 JADE2Q9NQC1 790 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 PKD2L1Q9P0L9 805 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 UBIAD1Q9Y5Z9 338 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 MYH7BA7E2Y1 1941 aa16.31■□□□□ 0.2
USE1-210ENST00000601662 MROH7Q68CQ1 1323 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 FAM86B1E9PN63 330 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 FIBPO43427 364 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 TDP2O95551 362 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 FAM86B2P0C5J1 330 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 RAG1P15918 1043 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 PTMSP20962 102 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 ICAM3P32942 547 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 SEMA3FQ13275 785 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 CALCRLQ16602 461 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 DGKDQ16760 1214 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 NBPF20Q3BBV1 942 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 HABP4Q5JVS0 413 aaKnown RBP16.3■□□□□ 0.2
USE1-210ENST00000601662 CYFIP1Q7L576 1253 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 C4orf32Q8N8J7 132 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 TMEM87AQ8NBN3 555 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 BADQ92934 168 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 GPRASP2Q96D09 838 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 UBE2OQ9C0C9 1292 aaKnown RBP16.3■□□□□ 0.2
USE1-210ENST00000601662 TRPV6Q9H1D0 765 aa16.3■□□□□ 0.2
USE1-210ENST00000601662 IGLV3-22A0A075B6J6 115 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 GOLGA6L4A6NEF3 574 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 WNT7AO00755 349 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 OR52Z1P0C646 297 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 ITGB5P18084 799 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 ITGB8P26012 769 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 ME1P48163 572 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 NEDD9Q14511 834 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 HSDL1Q3SXM5 330 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 DTHD1Q6ZMT9 781 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 FAM126BQ8IXS8 530 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 KRI1Q8N9T8 703 aaKnown RBP16.29■□□□□ 0.2
USE1-210ENST00000601662 SLC43A3Q8NBI5 491 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 EMID1Q96A84 441 aaPredicted RBP16.29■□□□□ 0.2
USE1-210ENST00000601662 MTMR9Q96QG7 549 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 PPP1R12CQ9BZL4 782 aa16.29■□□□□ 0.2
USE1-210ENST00000601662 FTOQ9C0B1 505 aaKnown RBP eCLIP16.29■□□□□ 0.2
USE1-210ENST00000601662 SRPRBQ9Y5M8 271 aaKnown RBP16.29■□□□□ 0.2
USE1-210ENST00000601662 NOP56O00567 594 aaKnown RBP16.28■□□□□ 0.2
USE1-210ENST00000601662 KIAA0355O15063 1070 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 CUTAO60888 179 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 ZNF286BP0CG31 522 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 MTMR1Q13613 665 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 TMEM266Q2M3C6 531 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 PPTC7Q8NI37 304 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 CYP2W1Q8TAV3 490 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 CHAMP1Q96JM3 812 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 RAB34Q9BZG1 259 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 KCNMB3Q9NPA1 279 aa16.28■□□□□ 0.2
USE1-210ENST00000601662 DDX11L8A8MPP1 907 aa16.27■□□□□ 0.2
USE1-210ENST00000601662 SLC37A4O43826 429 aa16.27■□□□□ 0.2
USE1-210ENST00000601662 B4GALT4O60513 344 aa16.27■□□□□ 0.2
USE1-210ENST00000601662 ATP9AO75110 1047 aa16.27■□□□□ 0.2
USE1-210ENST00000601662 MARCKSP29966 332 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms