RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 KRT23Q9C075 422 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 NSUN3Q9H649 340 aaKnown RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 TAF6LQ9Y6J9 622 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 COL4A6Q14031 1691 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 SIP14410 1827 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 ZNF318Q5VUA4 2279 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 PNMA6FA0A0J9YX94 578 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 GSTTP1A0A1W2PQM5 241 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 MBLAC1A4D2B0 266 aaPredicted RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 MEIS2O14770 477 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 MBTPS2O43462 519 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 NCK2O43639 380 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 ATP9AO75110 1047 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 STAM2O75886 525 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 CTSHP09668 335 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 DNAJB1P25685 340 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 MRE11P49959 708 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 NUCB1Q02818 461 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 ADAM15Q13444 863 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 NEDD9Q14511 834 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 LPIN1Q14693 890 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 IMMTQ16891 758 aaKnown RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 HERC4Q5GLZ8 1057 aaPredicted RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 MARCH8Q5T0T0 291 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 B4GALNT3Q6L9W6 998 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 RUFY4Q6ZNE9 571 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 HFE2Q6ZVN8 426 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 FIBCD1Q8N539 461 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 LMBR1Q8WVP7 490 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 LINC01599Q8WXQ3 324 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 APBB2Q92870 758 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 MSLNLQ96KJ4 702 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 IFIH1Q9BYX4 1025 aaKnown RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 LMAN2LQ9H0V9 348 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 KCNH6Q9H252 994 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 CNNM2Q9H8M5 875 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 AGO3Q9H9G7 860 aaKnown RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 ALG13Q9NP73 1137 aaKnown RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 CLDND1Q9NY35 253 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 RTEL1Q9NZ71 1219 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 ZBTB47Q9UFB7 747 aaPredicted RBP7.08□□□□□ -1.28
VRK3-220ENST00000600259 MICAL3Q7RTP6 2002 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 C5orf42Q9H799 3197 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 TECTAO75443 2155 aa7.08□□□□□ -1.28
VRK3-220ENST00000600259 MYH7BA7E2Y1 1941 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 NRCAMQ92823 1304 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 LINC01565O15544 149 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 FIBPO43427 364 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 TBX10O75333 385 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 DGKIO75912 1065 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 EYA4O95677 639 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 CYP21A2P08686 494 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 GHRP10912 638 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 GNAT1P11488 350 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 PTH1RQ03431 593 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 TRAF1Q13077 416 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 GNPTABQ3T906 1256 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 FBXO47Q5MNV8 452 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 UTP14CQ5TAP6 766 aaKnown RBP7.07□□□□□ -1.28
VRK3-220ENST00000600259 USP17L6PQ6QN14 398 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 BMP8AQ7Z5Y6 402 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 HOMER1Q86YM7 354 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 RNF135Q8IUD6 432 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 SPPL3Q8TCT6 385 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 IGDCC4Q8TDY8 1250 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 UIMC1Q96RL1 719 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 PCYT2Q99447 389 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 UBAC1Q9BSL1 405 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 DIAPH3Q9NSV4 1193 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 CLEC1BQ9P126 229 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 PLAGL2Q9UPG8 496 aa7.07□□□□□ -1.28
VRK3-220ENST00000600259 CACNA1HO95180 2353 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 BAZ2BQ9UIF8 2168 aaKnown RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 HIP1O00291 1037 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 PIK3CDO00329 1044 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 NOP56O00567 594 aaKnown RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 MMP1P03956 469 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 KCNA2P16389 499 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 ITGB5P18084 799 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 CTNNB1P35222 781 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 ANTXR2P58335 489 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 ARHGAP4P98171 946 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 COL9A3Q14050 684 aaPredicted RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 CBX2Q14781 532 aaPredicted RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 PCNX4Q63HM2 1172 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 XRRA1Q6P2D8 792 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 EDAQ92838 391 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 P2RX5Q93086 422 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 ZBTB10Q96DT7 871 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 PHOX2BQ99453 314 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 C11orf84Q9BUA3 381 aaPredicted RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 PLVAPQ9BX97 442 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 UPF3BQ9BZI7 483 aaKnown RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 MUTYHQ9UIF7 546 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 FAM50BQ9Y247 325 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 UBIAD1Q9Y5Z9 338 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 TTC3P53804 2025 aa7.06□□□□□ -1.28
VRK3-220ENST00000600259 ZFHX2Q9C0A1 2572 aaPredicted RBP7.06□□□□□ -1.28
VRK3-220ENST00000600259 ZDBF2Q9HCK1 2354 aa7.05□□□□□ -1.28
VRK3-220ENST00000600259 ADGRA3Q8IWK6 1321 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms