RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NLRC5Q86WI3 1866 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 C17orf102A2RUQ5 167 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 ZBTB5O15062 677 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 CYTH3O43739 400 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 LGALS2P05162 132 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 HOXD8P13378 290 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 MFAP1P55081 439 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 MRPS9P82933 396 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 SEMA3FQ13275 785 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 CLUL1Q15846 466 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 PUS10Q3MIT2 529 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 EPC2Q52LR7 807 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 PLEKHG4Q58EX7 1191 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 TCEAL5Q5H9L2 206 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 UTP14CQ5TAP6 766 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 PTCRAQ6ISU1 281 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 STOX1Q6ZVD7 989 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 CYFIP1Q7L576 1253 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 SERINC5Q86VE9 423 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 EXOC6Q8TAG9 804 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 ZBTB10Q96DT7 871 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 MTMR8Q96EF0 704 aa10.03□□□□□ -0.8
SHKBP1-220ENST00000599716 PALM3A6NDB9 673 aaPredicted RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 GRXCR2A6NFK2 248 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 H3BRB1 525 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 HAX1O00165 279 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 PPFIA4O75335 1185 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 AMHP03971 560 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 CCND2P30279 289 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 NUCB1Q02818 461 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 PTH1RQ03431 593 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 ZP2Q05996 745 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 COL9A3Q14050 684 aaPredicted RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 COL9A2Q14055 689 aaPredicted RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 SUGP1Q8IWZ8 645 aaKnown RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 ATOH1Q92858 354 aaPredicted RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 YTHDC1Q96MU7 727 aaKnown RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 YME1L1Q96TA2 773 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 MYL10Q9BUA6 226 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 DSCC1Q9BVC3 393 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 UPF3BQ9BZI7 483 aaKnown RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 KRT23Q9C075 422 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 TUT1Q9H6E5 874 aaKnown RBP10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 LMCD1Q9NZU5 365 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 PKD2L1Q9P0L9 805 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 INSL6Q9Y581 213 aa10.02□□□□□ -0.81
SHKBP1-220ENST00000599716 BPTFQ12830 3046 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 PRR23AA6NEV1 266 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GCOM1H8Y6P7 765 aaPredicted RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 POLR2MP0CAP2 368 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 PDE4AP27815 886 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GTF2F1P35269 517 aaKnown RBP eCLIP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 HTRA4P83105 476 aaPredicted RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 ARHGAP4P98171 946 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GHRHRQ02643 423 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GPM6BQ13491 265 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GRM4Q14833 912 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 CCDC178Q5BJE1 867 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 HERC4Q5GLZ8 1057 aaPredicted RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 USP17L6PQ6QN14 398 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 RUFY4Q6ZNE9 571 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 ASCL5Q7RTU5 278 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 RAB11FIP4Q86YS3 637 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 SEPT8Q92599 483 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 MRPL38Q96DV4 380 aaKnown RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GPR20Q99678 358 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 IFIH1Q9BYX4 1025 aaKnown RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 OSBPL3Q9H4L5 887 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 ALG13Q9NP73 1137 aaKnown RBP10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 PRKAG3Q9UGI9 489 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 TRPC6Q9Y210 931 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 NAV2Q8IVL1 2488 aa10.01□□□□□ -0.81
SHKBP1-220ENST00000599716 GCN1Q92616 2671 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 hCG_1642624A0A1W2PR95 340 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 C19orf67A6NJJ6 358 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 NOP56O00567 594 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 IFIT3O14879 490 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 EFCAB14O75071 495 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 PARNO95453 639 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 CYP21A2P08686 494 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 GHRP10912 638 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 GSPT1P15170 499 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 IBSPP21815 317 aaPredicted RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 MARK3P27448 753 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 HOXC8P31273 242 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 DLX2Q07687 328 aaPredicted RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 TMEM192Q8IY95 271 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 CMTR1Q8N1G2 835 aaKnown RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 BANK1Q8NDB2 785 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 LMBR1Q8WVP7 490 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 TOP1MTQ969P6 601 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 RWDD1Q9H446 243 aaPredicted RBP10□□□□□ -0.81
SHKBP1-220ENST00000599716 RIOX1Q9H6W3 641 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 CNNM2Q9H8M5 875 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 CLDND1Q9NY35 253 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 EMSYQ7Z589 1322 aa10□□□□□ -0.81
SHKBP1-220ENST00000599716 KAT6AQ92794 2004 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 SPATA31C2B4DYI2 1134 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms