RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SHHQ15465 462 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 PTGISQ16647 500 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 PLA2G4DQ86XP0 818 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 TMEM199Q8N511 208 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 C7orf31Q8N865 590 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 SEPT1Q8WYJ6 367 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 WASF1Q92558 559 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 ALG1Q9BT22 464 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 PTPRSQ13332 1948 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 JAK2O60674 1132 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 DTNBO60941 627 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 XBP1P17861 261 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 TRIM71Q2Q1W2 868 aaKnown RBP18.35■□□□□ 0.53
TRIM28-213ENST00000598355 RASIP1Q5U651 963 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 MOXD1Q6UVY6 613 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 C16orf59Q7L2K0 433 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 CAGE1Q8TC20 777 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 TBCKQ8TEA7 893 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 MBOAT7Q96N66 472 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 PCYT2Q99447 389 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 SDF4Q9BRK5 362 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 SH2B1Q9NRF2 756 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-213ENST00000598355 GJB4Q9NTQ9 266 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 PKD2L1Q9P0L9 805 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 ZNF215Q9UL58 517 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-213ENST00000598355 KCNJ14Q9UNX9 436 aa18.35■□□□□ 0.53
TRIM28-213ENST00000598355 CYP3A7-CYP3A51PA0A087WV96 503 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 IGKV6D-21A0A0A0MT36 114 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 IPO5O00410 1097 aaKnown RBP18.34■□□□□ 0.53
TRIM28-213ENST00000598355 CCNE2O96020 404 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 SMIM10L2AP0DMW4 78 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 SMIM10L2BP0DMW5 78 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 CYP3A7P24462 503 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 ZNF76P36508 570 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 ACTR2P61160 394 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 SP4Q02446 784 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 PTK7Q13308 1070 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 TMEM240Q5SV17 173 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 KRT25Q7Z3Z0 450 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 SERINC5Q86VE9 423 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 TNFRSF25Q93038 417 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 ZSCAN31Q96LW9 406 aaPredicted RBP18.34■□□□□ 0.53
TRIM28-213ENST00000598355 LLPHQ9BRT6 129 aaKnown RBP18.34■□□□□ 0.53
TRIM28-213ENST00000598355 IL23AQ9NPF7 189 aa18.34■□□□□ 0.53
TRIM28-213ENST00000598355 BFSP2Q13515 415 aa18.33■□□□□ 0.52
TRIM28-213ENST00000598355 GPR153Q6NV75 609 aa18.33■□□□□ 0.52
TRIM28-213ENST00000598355 PSRC1Q6PGN9 363 aaPredicted RBP18.33■□□□□ 0.52
TRIM28-213ENST00000598355 AFAP1L1Q8TED9 768 aa18.33■□□□□ 0.52
TRIM28-213ENST00000598355 WNT8BQ93098 351 aa18.33■□□□□ 0.52
TRIM28-213ENST00000598355 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.33■□□□□ 0.523e-11■□□□□ 9
TRIM28-213ENST00000598355 UPF2Q9HAU5 1272 aaKnown RBP18.33■□□□□ 0.52
TRIM28-213ENST00000598355 MICAL3Q7RTP6 2002 aa18.33■□□□□ 0.52
TRIM28-213ENST00000598355 SLC34A2O95436 690 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 PFKMP08237 780 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 CCL23P55773 120 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 CHMP4BP1P59074 171 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 NONOQ15233 471 aaKnown RBP eCLIP18.32■□□□□ 0.52
TRIM28-213ENST00000598355 Q4G0T1 1027 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 PRR16Q569H4 304 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 UTP14CQ5TAP6 766 aaKnown RBP18.32■□□□□ 0.52
TRIM28-213ENST00000598355 TRAF7Q6Q0C0 670 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 CCDC155Q8N6L0 562 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 OXER1Q8TDS5 423 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 ZNF577Q9BSK1 485 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 RNPEPQ9H4A4 650 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 SMARCAD1Q9H4L7 1026 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 TBC1D22BQ9NU19 505 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 ERAP1Q9NZ08 941 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 NOD1Q9Y239 953 aa18.32■□□□□ 0.52
TRIM28-213ENST00000598355 LOXHD1Q8IVV2 1947 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 NRCAMQ92823 1304 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 C17orf102A2RUQ5 167 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 IQCF3P0C7M6 154 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 RFC2P35250 354 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 ZNF200P98182 395 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-213ENST00000598355 ZNF746Q6NUN9 644 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-213ENST00000598355 ABHD15Q6UXT9 468 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 CCDC83Q8IWF9 413 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 LMBR1Q8WVP7 490 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 SCLYQ96I15 445 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 LRCH3Q96II8 777 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 EVPLQ92817 2033 aa18.31■□□□□ 0.52
TRIM28-213ENST00000598355 MBLAC1A4D2B0 266 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-213ENST00000598355 MSH4O15457 936 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 CD2BP2O95400 341 aaKnown RBP18.3■□□□□ 0.52
TRIM28-213ENST00000598355 TDP2O95551 362 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 MMP1P03956 469 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 CKBP12277 381 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 GPNMBQ14956 572 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 INF2Q27J81 1249 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 B3GNT9Q6UX72 402 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 PLPPR4Q7Z2D5 763 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 ETNPPLQ8TBG4 499 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 HERVK_113Q902F9 699 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 SLC5A5Q92911 643 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 RNPC3Q96LT9 517 aaKnown RBP18.3■□□□□ 0.52
TRIM28-213ENST00000598355 RIT2Q99578 217 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 BACH2Q9BYV9 841 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
TRIM28-213ENST00000598355 TREHO43280 583 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms