RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PTCRAQ6ISU1 281 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-212ENST00000597995 BANK1Q8NDB2 785 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 IGDCC4Q8TDY8 1250 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 CUL5Q93034 780 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 OSBPL7Q9BZF2 842 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 RBAK-RBAKDNI3L0D1 243 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 UPP2O95045 317 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 IL9P15248 144 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 ARHGAP4P98171 946 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 COL19A1Q14993 1142 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 UTP14CQ5TAP6 766 aaKnown RBP14.41□□□□□ -0.1
TRIM28-212ENST00000597995 TAF2Q6P1X5 1199 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 NLRX1Q86UT6 975 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 TRIM50Q86XT4 487 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 SMARCC2Q8TAQ2 1214 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 LMBR1Q8WVP7 490 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 PABPC5Q96DU9 382 aaKnown RBP14.41□□□□□ -0.1
TRIM28-212ENST00000597995 RRP36Q96EU6 259 aaKnown RBP14.41□□□□□ -0.1
TRIM28-212ENST00000597995 IL17RAQ96F46 866 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 ESYT1Q9BSJ8 1104 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 SPZ1Q9BXG8 430 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 IFIH1Q9BYX4 1025 aaKnown RBP14.41□□□□□ -0.1
TRIM28-212ENST00000597995 KAT6AQ92794 2004 aa14.41□□□□□ -0.1
TRIM28-212ENST00000597995 PRR33A8MZF0 331 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 C5orf67F2Z3F1 127 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 MEIS2O14770 477 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 NCK2O43639 380 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 DDAH1O94760 285 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 CHRNA1P02708 482 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 RB1P06400 928 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 ALADP13716 330 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 KIF5BP33176 963 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 BMP2KLQ5H9B9 411 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 MB21D2Q8IYB1 491 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-212ENST00000597995 GPRASP2Q96D09 838 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 CDHR1Q96JP9 859 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 LZTS2Q9BRK4 669 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 MTA3Q9BTC8 594 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 NSUN3Q9H649 340 aaKnown RBP14.4□□□□□ -0.1
TRIM28-212ENST00000597995 EHMT1Q9H9B1 1298 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 FAM50BQ9Y247 325 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 RWDD3Q9Y3V2 267 aa14.4□□□□□ -0.1
TRIM28-212ENST00000597995 FAM86C2PA6NEL3 165 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 SSTR3P32745 418 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-212ENST00000597995 GNAQP50148 359 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 TCEAL5Q5H9L2 206 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 USP17L6PQ6QN14 398 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 RSPH3Q86UC2 560 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 FIBCD1Q8N539 461 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 CTCFLQ8NI51 663 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-212ENST00000597995 PIBF1Q8WXW3 757 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 SEPT1Q8WYJ6 367 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 LMAN2LQ9H0V9 348 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 SEC63Q9UGP8 760 aaKnown RBP14.39□□□□□ -0.11
TRIM28-212ENST00000597995 TELO2Q9Y4R8 837 aa14.39□□□□□ -0.11
TRIM28-212ENST00000597995 RALGAPA2Q2PPJ7 1873 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 DOCK5Q9H7D0 1870 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 H3BQ06 376 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-212ENST00000597995 SLC27A2O14975 620 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 MAFGO15525 162 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 RPLP2P05387 115 aaKnown RBP14.38□□□□□ -0.11
TRIM28-212ENST00000597995 TCF7P36402 384 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-212ENST00000597995 BMPR1AP36894 532 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 SP4Q02446 784 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 MGAT3Q09327 533 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 NECTIN1Q15223 517 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 ZNF654Q8IZM8 581 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 TMTC2Q8N394 836 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 C11orf84Q9BUA3 381 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-212ENST00000597995 LY9Q9HBG7 655 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 ERAP1Q9NZ08 941 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 PRKAG3Q9UGI9 489 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 MYO7AQ13402 2215 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 NLRC5Q86WI3 1866 aa14.38□□□□□ -0.11
TRIM28-212ENST00000597995 GSTTP1A0A1W2PQM5 241 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 MBLAC1A4D2B0 266 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-212ENST00000597995 ENPP3O14638 875 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 ATP9AO75110 1047 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 LINC00271P0C7V0 271 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 GHRP10912 638 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 KCNA2P16389 499 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 CTNNB1P35222 781 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 PPFIA1Q13136 1202 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 LPIN1Q14693 890 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 RUFY4Q6ZNE9 571 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 CLP1Q92989 425 aaKnown RBP14.37□□□□□ -0.11
TRIM28-212ENST00000597995 SMARCAD1Q9H4L7 1026 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 PSTPIP2Q9H939 334 aa14.37□□□□□ -0.11
TRIM28-212ENST00000597995 POTEB3A0JP26 581 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 ITGB5P18084 799 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 GRIK4Q16099 956 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 CTC1Q2NKJ3 1217 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 FBXO47Q5MNV8 452 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 CREB3L3Q68CJ9 461 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 POTEBQ6S5H4 581 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 CASC1Q6TDU7 716 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 SRBD1Q8N5C6 995 aaKnown RBP14.36□□□□□ -0.11
TRIM28-212ENST00000597995 ZNF689Q96CS4 500 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-212ENST00000597995 PLVAPQ9BX97 442 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 RC3H2Q9HBD1 1191 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms