RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DLX2Q07687 328 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-215ENST00000597649 LMBR1Q8WVP7 490 aa19.02■□□□□ 0.64
SHKBP1-215ENST00000597649 CLDND1Q9NY35 253 aa19.02■□□□□ 0.64
SHKBP1-215ENST00000597649 PNMA6FA0A0J9YX94 578 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 GNAT1P11488 350 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 BMPR1AP36894 532 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 HYAL1Q12794 435 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 NEDD9Q14511 834 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 UTP14CQ5TAP6 766 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 RUFY4Q6ZNE9 571 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 RPAINQ86UA6 219 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 ADHFE1Q8IWW8 467 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 FIBCD1Q8N539 461 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 APBB2Q92870 758 aa19.01■□□□□ 0.63
SHKBP1-215ENST00000597649 C5orf67F2Z3F1 127 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 HIP1O00291 1037 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 ENPP3O14638 875 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 CTNNB1P35222 781 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 GTF2F1P35269 517 aaKnown RBP eCLIP19■□□□□ 0.631e-6■■■■■ 54.6
SHKBP1-215ENST00000597649 IRS1P35568 1242 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 TROAPQ12815 778 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 CLUL1Q15846 466 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 GNPTABQ3T906 1256 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 PIBF1Q8WXW3 757 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 EHMT1Q9H9B1 1298 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 RC3H2Q9HBD1 1191 aaKnown RBP19■□□□□ 0.63
SHKBP1-215ENST00000597649 PRKAG3Q9UGI9 489 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 TAF6LQ9Y6J9 622 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 COL4A6Q14031 1691 aa19■□□□□ 0.63
SHKBP1-215ENST00000597649 USP34Q70CQ2 3546 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 FIBPO43427 364 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 RB1P06400 928 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 GHRP10912 638 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 SP4Q02446 784 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 MGAT3Q09327 533 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 LPIN1Q14693 890 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 CSPP1Q1MSJ5 1256 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 CLP1Q92989 425 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 FBXL18Q96ME1 805 aa18.99■□□□□ 0.63
SHKBP1-215ENST00000597649 IFIT3O14879 490 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 STAM2O75886 525 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 MRE11P49959 708 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 NHLH1Q02575 133 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 TRAF1Q13077 416 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 CAMK1Q14012 370 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 SMAD2Q15796 467 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 USP17L6PQ6QN14 398 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 HFE2Q6ZVN8 426 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 SKAP1Q86WV1 359 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 ZNF689Q96CS4 500 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 SENP7Q9BQF6 1050 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 FAM50BQ9Y247 325 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 ZNF318Q5VUA4 2279 aa18.98■□□□□ 0.63
SHKBP1-215ENST00000597649 LINC01565O15544 149 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 NCK2O43639 380 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 ATP9AO75110 1047 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 CYP21A2P08686 494 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 TTC22Q5TAA0 569 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 ZNF215Q9UL58 517 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 NRCAMQ92823 1304 aa18.97■□□□□ 0.63
SHKBP1-215ENST00000597649 MEIS2O14770 477 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 MBTPS2O43462 519 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 CSPG5O95196 566 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 PTH1RQ03431 593 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 MARCH8Q5T0T0 291 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 PCNX4Q63HM2 1172 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 RTN4RL1Q86UN2 441 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 ZBTB10Q96DT7 871 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 C11orf84Q9BUA3 381 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 LMAN2LQ9H0V9 348 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 IGFLR1Q9H665 355 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 AGO3Q9H9G7 860 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 ALG13Q9NP73 1137 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 DOCK5Q9H7D0 1870 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 ADGRA3Q8IWK6 1321 aa18.96■□□□□ 0.63
SHKBP1-215ENST00000597649 TECTAO75443 2155 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 NLRC5Q86WI3 1866 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 GSTTP1A0A1W2PQM5 241 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 TBX10O75333 385 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 DNAJB1P25685 340 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 TCF7P36402 384 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 CRIPAKQ8N1N5 446 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 DNAJB3Q8WWF6 145 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 LINC01599Q8WXQ3 324 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 MUTYHQ9UIF7 546 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 PLAGL2Q9UPG8 496 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 ATG2AQ2TAZ0 1938 aa18.95■□□□□ 0.62
SHKBP1-215ENST00000597649 DGKIO75912 1065 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 KCNA2P16389 499 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 MARK3P27448 753 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 ANTXR2P58335 489 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 TRDNQ13061 729 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 ADAM15Q13444 863 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 BTG3Q14201 252 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 WTAPQ15007 396 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 FBXO47Q5MNV8 452 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 TAF2Q6P1X5 1199 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 IGDCC4Q8TDY8 1250 aa18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 UPF3BQ9BZI7 483 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-215ENST00000597649 TTC3P53804 2025 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms