RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 GNL2Q13823 731 aaKnown RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 BAATQ14032 418 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 MYSM1Q5VVJ2 828 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 CLEC17AQ6ZS10 378 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 MCF2L2Q86YR7 1114 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 TEX2Q8IWB9 1127 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 REXO1Q8N1G1 1221 aaKnown RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 SAMD3Q8N6K7 520 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 IRF2BPLQ9H1B7 796 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 ACAD9Q9H845 621 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 COL20A1Q9P218 1284 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 TFIP11Q9UBB9 837 aaKnown RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 MED19A0JLT2 244 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 ZBBXA8MT70 800 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 LPXNO60711 386 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 BAG4O95429 457 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 FOSP01100 380 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 CDK7P50613 346 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 RPS6P62753 249 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 INF2Q27J81 1249 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 PUS10Q3MIT2 529 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 NSMFQ6X4W1 530 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 KRT25Q7Z3Z0 450 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 BMP8AQ7Z5Y6 402 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 FCHSD1Q86WN1 690 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 NCAPG2Q86XI2 1143 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 SHCBP1Q8NEM2 672 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 SYTL5Q8TDW5 730 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 TBCKQ8TEA7 893 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 CRYGNQ8WXF5 182 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 PURBQ96QR8 312 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 TAAR1Q96RJ0 339 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 FTOQ9C0B1 505 aaKnown RBP eCLIP10.74□□□□□ -0.695e-6■■■■□ 23.7
TRIM28-208ENST00000597172 A1CFQ9NQ94 594 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 SLC5A4Q9NY91 659 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 MAP3K20Q9NYL2 800 aaKnown RBP10.74□□□□□ -0.69
TRIM28-208ENST00000597172 CYP39A1Q9NYL5 469 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 LMCD1Q9NZU5 365 aa10.74□□□□□ -0.69
TRIM28-208ENST00000597172 CCDC194A0A1B0GVG4 234 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 MOXD2PA6NHM9 499 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 STRNO43815 780 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 COBLO75128 1261 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 TAP1Q03518 808 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 AP3B2Q13367 1082 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 NBR1Q14596 966 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 NONOQ15233 471 aaKnown RBP eCLIP10.73□□□□□ -0.69
TRIM28-208ENST00000597172 SLC30A10Q6XR72 485 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 RNF207Q6ZRF8 634 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 PBXIP1Q96AQ6 731 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 USP28Q96RU2 1077 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 ANO3Q9BYT9 981 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 MAF1Q9H063 256 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 MROH8Q9H579 483 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 FBXO40Q9UH90 709 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 NRBP1Q9UHY1 535 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 TRPC6Q9Y210 931 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 CNPY2Q9Y2B0 182 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 PCDHB6Q9Y5E3 794 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 ATP6V1DQ9Y5K8 247 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 CLIC4Q9Y696 253 aa10.73□□□□□ -0.69
TRIM28-208ENST00000597172 MYO7AQ13402 2215 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ZFHX4Q86UP3 3567 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 C19orf67A6NJJ6 358 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 TLR3O15455 904 aaKnown RBP10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ADAMTS4O75173 837 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ATP2B1P20020 1258 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 COPB2P35606 906 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ZP2Q05996 745 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 KCNA10Q16322 511 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 RILPL1Q5EBL4 403 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ATL3Q6DD88 541 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 MCTP2Q6DN12 878 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ASCL5Q7RTU5 278 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 SUGP1Q8IWZ8 645 aaKnown RBP10.72□□□□□ -0.69
TRIM28-208ENST00000597172 RPUSD2Q8IZ73 545 aaKnown RBP10.72□□□□□ -0.69
TRIM28-208ENST00000597172 VTI1AQ96AJ9 217 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 GLT1D1Q96MS3 346 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 CNTNAP3BQ96NU0 1288 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 CNTNAP3Q9BZ76 1288 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 RTEL1Q9NZ71 1219 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 RCOR1Q9UKL0 485 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 ELP1O95163 1332 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 DMDP11532 3685 aa10.72□□□□□ -0.69
TRIM28-208ENST00000597172 DNAJC25-GNG10A0A024R161 153 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 SOWAHBA6NEL2 793 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 SPDYE3A6NKU9 549 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 PROB1E7EW31 1015 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 ARVCFO00192 962 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 ASTN1O14525 1302 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 CYP3A4P08684 503 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 SREBF1P36956 1147 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 TRAPPC10P48553 1259 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 NASPP49321 788 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-208ENST00000597172 USP11P51784 963 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 CNTN2Q02246 1040 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 CEBPZQ03701 1054 aaKnown RBP10.71□□□□□ -0.69
TRIM28-208ENST00000597172 PTPAQ15257 358 aa10.71□□□□□ -0.69
TRIM28-208ENST00000597172 SF3A1Q15459 793 aaKnown RBP10.71□□□□□ -0.69
TRIM28-208ENST00000597172 ZNF174Q15697 407 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms