RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 DDX39AO00148 427 aaKnown RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 F2P00734 622 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 PSMC6P62333 389 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 ATP2C1P98194 919 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 GRIN1Q05586 938 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 PPP2R5CQ13362 524 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 ORC2Q13416 577 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 SNX17Q15036 470 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 FOXD4L5Q5VV16 416 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 RNF180Q86T96 592 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 TRIM50Q86XT4 487 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 GIMAP8Q8ND71 665 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 FOXD4L4Q8WXT5 416 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 SEPT1Q8WYJ6 367 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 FERMT2Q96AC1 680 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 RNPEPQ9H4A4 650 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 ZSCAN16Q9H4T2 348 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 JPH1Q9HDC5 661 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 WRAP73Q9P2S5 460 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 ELP1O95163 1332 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 MOXD2PA6NHM9 499 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 ZNF862O60290 1169 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 LGALS2P05162 132 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 HSP90AA1P07900 732 aaKnown RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 PDIA4P13667 645 aaKnown RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 HOXC8P31273 242 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 TCF7P36402 384 aaPredicted RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 CPT1AP50416 773 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 UGCGQ16739 394 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 LRCH2Q5VUJ6 765 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 ZNF746Q6NUN9 644 aaPredicted RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 CCDC60Q8IWA6 550 aaPredicted RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 PCSK9Q8NBP7 692 aaKnown RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 NAP1L4Q99733 375 aaKnown RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 HSD17B14Q9BPX1 270 aa11.95□□□□□ -0.5
LIG1-210ENST00000596332 MAFBQ9Y5Q3 323 aaPredicted RBP11.95□□□□□ -0.5
LIG1-210ENST00000596332 SCN10AQ9Y5Y9 1956 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 ZBTB42B2RXF5 422 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 NEMFO60524 1076 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 GAS7O60861 476 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 MYL3P08590 195 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 SUPT20HL2P0C7V6 817 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 ZNF286BP0CG31 522 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 SPATA31C1P0DKV0 1188 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 TXKP42681 527 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 NASPP49321 788 aaPredicted RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 ADAM17P78536 824 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 SP4Q02446 784 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 GNL2Q13823 731 aaKnown RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 SF3A1Q15459 793 aaKnown RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 CALCRLQ16602 461 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 ECM1Q16610 540 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 DGKDQ16760 1214 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 LRRC26Q2I0M4 334 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 C1orf53Q5VUE5 145 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 IGSF22Q8N9C0 903 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 AFAP1L1Q8TED9 768 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 CEP89Q96ST8 783 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 SDF4Q9BRK5 362 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 MMTAG2Q9BU76 263 aaKnown RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 TEKT3Q9BXF9 490 aa11.94□□□□□ -0.5
LIG1-210ENST00000596332 SENP6Q9GZR1 1112 aaPredicted RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 TTC12Q9H892 705 aaPredicted RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 TFIP11Q9UBB9 837 aaKnown RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 MORC2Q9Y6X9 1032 aaPredicted RBP11.94□□□□□ -0.5
LIG1-210ENST00000596332 EMSYQ7Z589 1322 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 H3BRB1 525 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 SLITRK3O94933 977 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 OR52Z1P0C646 297 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 PRPHP41219 470 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 FXR2P51116 673 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIG1-210ENST00000596332 KRT76Q01546 638 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 SLC39A14Q15043 492 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 NBPF20Q3BBV1 942 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 MARCH8Q5T0T0 291 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 SWSAP1Q6NVH7 229 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 LINC00301Q8NCQ3 95 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 MTG1Q9BT17 334 aaPredicted RBP11.93□□□□□ -0.5
LIG1-210ENST00000596332 TUT1Q9H6E5 874 aaKnown RBP11.93□□□□□ -0.5
LIG1-210ENST00000596332 C11orf49Q9H6J7 331 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 SPC25Q9HBM1 224 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 DISC1Q9NRI5 854 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 POLR3EQ9NVU0 708 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 RGL1Q9NZL6 768 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 PCDH10Q9P2E7 1040 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 FBXO2Q9UK22 296 aaPredicted RBP11.93□□□□□ -0.5
LIG1-210ENST00000596332 NOL7Q9UMY1 257 aaKnown RBP11.93□□□□□ -0.5
LIG1-210ENST00000596332 PCDHA12Q9UN75 941 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 PCDHA10Q9Y5I2 948 aa11.93□□□□□ -0.5
LIG1-210ENST00000596332 IGSF9BQ9UPX0 1349 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 POTEMA6NI47 508 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 PP2D1A8MPX8 630 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 KBTBD13C9JR72 458 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 ZBTB39O15060 712 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 KPNA6O60684 536 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 CABYRO75952 493 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 CD4P01730 458 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 CDC25AP30304 524 aa11.92□□□□□ -0.5
LIG1-210ENST00000596332 ANP32AP39687 249 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms