RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 MSH4O15457 936 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 CYP3A7P24462 503 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 USP11P51784 963 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 ACTR2P61160 394 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 PTPN11Q06124 597 aaPredicted RBP12.68□□□□□ -0.38
VRK3-210ENST00000596121 PTGISQ16647 500 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 C9orf50Q5SZB4 431 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 KRT40Q6A162 431 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 SEPT1Q8WYJ6 367 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 WASF1Q92558 559 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 TMX3Q96JJ7 454 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 MBOAT7Q96N66 472 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 LBHD1Q9BQE6 289 aaPredicted RBP12.68□□□□□ -0.38
VRK3-210ENST00000596121 LLPHQ9BRT6 129 aaKnown RBP12.68□□□□□ -0.38
VRK3-210ENST00000596121 TUT1Q9H6E5 874 aaKnown RBP12.68□□□□□ -0.38
VRK3-210ENST00000596121 JPH1Q9HDC5 661 aaPredicted RBP12.68□□□□□ -0.38
VRK3-210ENST00000596121 SLC9A2Q9UBY0 812 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 BTBD18B2RXH4 712 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 IPO5O00410 1097 aaKnown RBP12.67□□□□□ -0.38
VRK3-210ENST00000596121 SOX1O00570 391 aaPredicted RBP12.67□□□□□ -0.38
VRK3-210ENST00000596121 WNT7AO00755 349 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 LGR5O75473 907 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 ATG7O95352 703 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 CSF2RAP15509 400 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 HOXC8P31273 242 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 CCL23P55773 120 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 GUCY1B3Q02153 619 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 SHHQ15465 462 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 MFSD5Q6N075 450 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 KRT25Q7Z3Z0 450 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 C7orf31Q8N865 590 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 ZNF577Q9BSK1 485 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 HIPK3Q9H422 1215 aa12.67□□□□□ -0.38
VRK3-210ENST00000596121 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
VRK3-210ENST00000596121 IGKV6D-21A0A0A0MT36 114 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SLC37A4O43826 429 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 ST18O60284 1047 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 MMP1P03956 469 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SMIM10L2AP0DMW4 78 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SMIM10L2BP0DMW5 78 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 ACRP10323 421 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 GPNMBQ14956 572 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 NONOQ15233 471 aaKnown RBP eCLIP12.66□□□□□ -0.38
VRK3-210ENST00000596121 TRIM71Q2Q1W2 868 aaKnown RBP12.66□□□□□ -0.38
VRK3-210ENST00000596121 Q4G0T1 1027 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 ABHD15Q6UXT9 468 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 PIK3AP1Q6ZUJ8 805 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SCLYQ96I15 445 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SDF4Q9BRK5 362 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 KATNAL1Q9BW62 490 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SETD4Q9NVD3 440 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 SZT2Q5T011 3432 aa12.66□□□□□ -0.38
VRK3-210ENST00000596121 TRIP12Q14669 1992 aaPredicted RBP12.65□□□□□ -0.38
VRK3-210ENST00000596121 CCDC194A0A1B0GVG4 234 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 TREHO43280 583 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 SUPT20HL2P0C7V6 817 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 XBP1P17861 261 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 ATP4AP20648 1035 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 MARK3P27448 753 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 KRT2P35908 639 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 FXR1P51114 621 aaKnown RBP eCLIP12.65□□□□□ -0.38
VRK3-210ENST00000596121 ADAM17P78536 824 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 SETQ01105 290 aaPredicted RBP12.65□□□□□ -0.38
VRK3-210ENST00000596121 FPGSQ05932 587 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 LETM2Q2VYF4 491 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 TRAF7Q6Q0C0 670 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 DIS3L2Q8IYB7 885 aaKnown RBP12.65□□□□□ -0.38
VRK3-210ENST00000596121 TDHQ8IZJ6 230 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 ETNPPLQ8TBG4 499 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 ZBTB10Q96DT7 871 aa12.65□□□□□ -0.38
VRK3-210ENST00000596121 EMSYQ7Z589 1322 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 LAMA2P24043 3122 aaKnown RBP12.64□□□□□ -0.39
VRK3-210ENST00000596121 A0A1W2PPC1 479 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 C17orf102A2RUQ5 167 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 PSMD10O75832 226 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 PLCB4Q15147 1175 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 TMEM240Q5SV17 173 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 MARCH8Q5T0T0 291 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 B3GNT9Q6UX72 402 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 SERINC5Q86VE9 423 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 CCDC60Q8IWA6 550 aaPredicted RBP12.64□□□□□ -0.39
VRK3-210ENST00000596121 LMBR1Q8WVP7 490 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 GLG1Q92896 1179 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 C8orf76Q96K31 380 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.64□□□□□ -0.398e-11■■■■□ 20.6
VRK3-210ENST00000596121 OSBPL7Q9BZF2 842 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 SMARCAD1Q9H4L7 1026 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 TBC1D22BQ9NU19 505 aa12.64□□□□□ -0.39
VRK3-210ENST00000596121 KIF28PB7ZC32 967 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 IQCF3P0C7M6 154 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 STAT5BP51692 787 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 RBL2Q08999 1139 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 PTK7Q13308 1070 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 MBTPS1Q14703 1052 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 TCTN1Q2MV58 587 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 PPP4R3AQ6IN85 833 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 SWSAP1Q6NVH7 229 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 MOXD1Q6UVY6 613 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 RUFY4Q6ZNE9 571 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms