RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 EMSYQ7Z589 1322 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 DDX39AO00148 427 aaKnown RBP16.53■□□□□ 0.24
VRK3-206ENST00000594090 TDP2O95551 362 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 ACTR2P61160 394 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 NR5A1Q13285 461 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 MOXD1Q6UVY6 613 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 PIK3AP1Q6ZUJ8 805 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 TNFRSF25Q93038 417 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 UIMC1Q96RL1 719 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 CYP3A7-CYP3A51PA0A087WV96 503 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 DHX15O43143 795 aaKnown RBP16.52■□□□□ 0.23
VRK3-206ENST00000594090 CYP2C9P11712 490 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 CYP3A7P24462 503 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 PTGISQ16647 500 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 Q4G0T1 1027 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 EARS2Q5JPH6 523 aaKnown RBP16.52■□□□□ 0.23
VRK3-206ENST00000594090 MFSD5Q6N075 450 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 NEK8Q86SG6 692 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 DIS3L2Q8IYB7 885 aaKnown RBP16.52■□□□□ 0.23
VRK3-206ENST00000594090 FAM184AQ8NB25 1140 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 C8orf76Q96K31 380 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 MBOAT7Q96N66 472 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 CTAGE1Q96RT6 745 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 NOC4LQ9BVI4 516 aaKnown RBP16.52■□□□□ 0.23
VRK3-206ENST00000594090 NOD1Q9Y239 953 aa16.52■□□□□ 0.23
VRK3-206ENST00000594090 CEP290O15078 2479 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 UMODL1Q5DID0 1318 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 TANC1Q9C0D5 1861 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 A0A1W2PPC1 479 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 MSH4O15457 936 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 LGR5O75473 907 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 CCNE2O96020 404 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 SMIM10L2AP0DMW4 78 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 SMIM10L2BP0DMW5 78 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 HOXC8P31273 242 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 CYP2C18P33260 490 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 GUCY1B3Q02153 619 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 LETM2Q2VYF4 491 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 HABP4Q5JVS0 413 aaKnown RBP16.51■□□□□ 0.23
VRK3-206ENST00000594090 PCYT2Q99447 389 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 SMARCAD1Q9H4L7 1026 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 TBC1D22BQ9NU19 505 aa16.51■□□□□ 0.23
VRK3-206ENST00000594090 RANBP2P49792 3224 aaKnown RBP16.51■□□□□ 0.23
VRK3-206ENST00000594090 FAM205CA6NFA0 338 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 BTBD18B2RXH4 712 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 ATG7O95352 703 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 FPGSQ05932 587 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 HIC1Q14526 733 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 TDHQ8IZJ6 230 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 GLG1Q92896 1179 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 WNT8AQ9H1J5 351 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 ERAP1Q9NZ08 941 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 TCEAL9Q9UHQ7 104 aa16.5■□□□□ 0.23
VRK3-206ENST00000594090 C17orf102A2RUQ5 167 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 SLC37A4O43826 429 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 GCFC2P16383 781 aaKnown RBP16.49■□□□□ 0.23
VRK3-206ENST00000594090 MARK3P27448 753 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 ZNF746Q6NUN9 644 aaPredicted RBP16.49■□□□□ 0.23
VRK3-206ENST00000594090 TMEM199Q8N511 208 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 FBXO18Q8NFZ0 1043 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 SLC5A5Q92911 643 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 RIT2Q99578 217 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 RNPEPQ9H4A4 650 aa16.49■□□□□ 0.23
VRK3-206ENST00000594090 DDX25Q9UHL0 483 aaKnown RBP16.49■□□□□ 0.23
VRK3-206ENST00000594090 IGKV6D-21A0A0A0MT36 114 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 PITPNM1O00562 1244 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 GAS7O60861 476 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 EPHB4P54760 987 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 ZNF200P98182 395 aaPredicted RBP16.48■□□□□ 0.23
VRK3-206ENST00000594090 KRT76Q01546 638 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 PPIGQ13427 754 aaKnown RBP eCLIP16.48■□□□□ 0.233e-6■■■■□ 22
VRK3-206ENST00000594090 BFSP2Q13515 415 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 SAFBQ15424 915 aaKnown RBP eCLIP16.48■□□□□ 0.23
VRK3-206ENST00000594090 LRCH2Q5VUJ6 765 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 PPP4R3AQ6IN85 833 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 ABHD15Q6UXT9 468 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 SMAP1Q8IYB5 467 aaPredicted RBP16.48■□□□□ 0.23
VRK3-206ENST00000594090 ETNPPLQ8TBG4 499 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 CAGE1Q8TC20 777 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 DHX38Q92620 1227 aaKnown RBP16.48■□□□□ 0.23
VRK3-206ENST00000594090 NAP1L4Q99733 375 aaKnown RBP16.48■□□□□ 0.23
VRK3-206ENST00000594090 AZI2Q9H6S1 392 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 KIF3AQ9Y496 699 aa16.48■□□□□ 0.23
VRK3-206ENST00000594090 TRIP12Q14669 1992 aaPredicted RBP16.47■□□□□ 0.23
VRK3-206ENST00000594090 CCNT1O60563 726 aaKnown RBP16.47■□□□□ 0.23
VRK3-206ENST00000594090 PSMD10O75832 226 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 CSF2RAP15509 400 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 CCL23P55773 120 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 PTK7Q13308 1070 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 MIS18BP1Q6P0N0 1132 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 PLPPR4Q7Z2D5 763 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 CCDC60Q8IWA6 550 aaPredicted RBP16.47■□□□□ 0.23
VRK3-206ENST00000594090 CCDC155Q8N6L0 562 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 LMBR1Q8WVP7 490 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 ATP6V0A1Q93050 837 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 GJA10Q969M2 543 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 TEKT3Q9BXF9 490 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 SETD4Q9NVD3 440 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 NRCAMQ92823 1304 aa16.47■□□□□ 0.23
VRK3-206ENST00000594090 BACH1O14867 736 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 244.1 ms