RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 AMHP03971 560 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 DCNP07585 359 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 PDIA4P13667 645 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 CDK11BP21127 795 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 FECHP22830 423 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 USP14P54578 494 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 CHMP4BP1P59074 171 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 IKBKEQ14164 716 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 RNF20Q5VTR2 975 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 ZNF771Q7L3S4 317 aaPredicted RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 TLK2Q86UE8 772 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 DZIP1Q86YF9 867 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 C1orf210Q8IVY1 113 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 EFHBQ8N7U6 833 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 ZNF397Q8NF99 534 aaPredicted RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 IPO4Q8TEX9 1081 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 NLRP7Q8WX94 980 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 ATRIPQ8WXE1 791 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 SUSD6Q92537 303 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 C12orf42Q96LP6 360 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 ARID3AQ99856 593 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 ESYT1Q9BSJ8 1104 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 C11orf84Q9BUA3 381 aaPredicted RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 SEZ6LQ9BYH1 1024 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 PUS3Q9BZE2 481 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 LMAN2LQ9H0V9 348 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 KCNF1Q9H3M0 494 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 CACNA2D2Q9NY47 1150 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 KCNK4Q9NYG8 393 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 DDX41Q9UJV9 622 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 DIS3Q9Y2L1 958 aaKnown RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 PAXBP1Q9Y5B6 917 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 TEP1Q99973 2627 aaKnown RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 ASTN1O14525 1302 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 IGF2RP11717 2491 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 MYO7AQ13402 2215 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 PI4KAP2A4QPH2 592 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 AXIN1O15169 862 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 ZBTB24O43167 697 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 DYNC1LI2O43237 492 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 TOP3BO95985 862 aaKnown RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 GH2P01242 217 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 HOXB7P09629 217 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 CCDC192P0DO97 292 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 ZSCAN22P10073 491 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 U2AF2P26368 475 aaKnown RBP eCLIP4.79□□□□□ -1.647e-8■■■□□ 18.4
LIG3-211ENST00000588713 CDC25BP30305 580 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 NEK4P51957 841 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 HTRA4P83105 476 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 TNFAIP2Q03169 654 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 TBC1D8BQ0IIM8 1120 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 COG2Q14746 738 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 METTL24Q5JXM2 366 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 TMEM63BQ5T3F8 832 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 LMBR1LQ6UX01 489 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 TREML4Q6UXN2 200 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 ZNF605Q86T29 641 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 KRT222Q8N1A0 295 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 PI4KAP1Q8N8J0 262 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 FAM200AQ8TCP9 573 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 GATA6Q92908 595 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 SRCIN1Q9C0H9 1055 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 AP5M1Q9H0R1 490 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 TTC12Q9H892 705 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 BABAM1Q9NWV8 329 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 CALCOCO1Q9P1Z2 691 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 LIMD1Q9UGP4 676 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 HERC5Q9UII4 1024 aaKnown RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 CDH22Q9UJ99 828 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 PYCARDQ9ULZ3 195 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 SLC27A5Q9Y2P5 690 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 GPSM3Q9Y4H4 160 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 RAI2Q9Y5P3 530 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 MORC2Q9Y6X9 1032 aaPredicted RBP4.79□□□□□ -1.64
LIG3-211ENST00000588713 TANC1Q9C0D5 1861 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 LAMA4Q16363 1823 aa4.79□□□□□ -1.64
LIG3-211ENST00000588713 TTC24A2A3L6 582 aaPredicted RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 PYCARD-AS1I3L0S3 204 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 J3QKU1 62 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 KIF2AO00139 706 aaPredicted RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 ELL2O00472 640 aaPredicted RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 PER2O15055 1255 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 WDR46O15213 610 aaKnown RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 NEMFO60524 1076 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 NBNO60934 754 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 EFCAB14O75071 495 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 GADD45BO75293 160 aaPredicted RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 CAVIN2O95810 425 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 F13A1P00488 732 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 MMP1P03956 469 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 MYL3P08590 195 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 GCGRP47871 477 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 PDE1AP54750 535 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 CASP7P55210 303 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 PDE4CQ08493 712 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 GPNMBQ14956 572 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 LRRFIP1Q32MZ4 808 aaKnown RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 PSAPL1Q6NUJ1 521 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 PRR23CQ6ZRP0 262 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms