RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 CHRNA1P02708 482 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 GHRP10912 638 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 GNAT1P11488 350 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 TCF15Q12870 199 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 ADAM15Q13444 863 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 CAMK1Q14012 370 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 TRIM67Q6ZTA4 783 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 ZNF689Q96CS4 500 aaPredicted RBP12.82□□□□□ -0.36
VPS4B-202ENST00000588059 USP26Q9BXU7 913 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 IGFLR1Q9H665 355 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 EHMT1Q9H9B1 1298 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 SUPT16HQ9Y5B9 1047 aaKnown RBP12.82□□□□□ -0.36
VPS4B-202ENST00000588059 PCDHA1Q9Y5I3 950 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 CACNA1HO95180 2353 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 PLXNA4Q9HCM2 1894 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ZBTB5O15062 677 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ST18O60284 1047 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 NDUFV1P49821 464 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ARHGAP4P98171 946 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 SEMA3FQ13275 785 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 BTG3Q14201 252 aaPredicted RBP12.81□□□□□ -0.36
VPS4B-202ENST00000588059 LPIN1Q14693 890 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ANKRD45Q5TZF3 282 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 METTL7BQ6UX53 244 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 SAMD3Q8N6K7 520 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 SMRP1Q8NCR6 262 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 PBXIP1Q96AQ6 731 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 GPR20Q99678 358 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 PLVAPQ9BX97 442 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ALG13Q9NP73 1137 aaKnown RBP12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ZSWIM5Q9P217 1185 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 ZNF215Q9UL58 517 aaPredicted RBP12.81□□□□□ -0.36
VPS4B-202ENST00000588059 TELO2Q9Y4R8 837 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 FRMPD4Q14CM0 1322 aa12.81□□□□□ -0.36
VPS4B-202ENST00000588059 LOXHD1Q8IVV2 1947 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 LOC730098B7Z3J9 87 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 KLRF2D3W0D1 207 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 GCOM1H8Y6P7 765 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-202ENST00000588059 POLR2MP0CAP2 368 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 DNAJB1P25685 340 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 ICAM3P32942 547 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 MRPS9P82933 396 aaKnown RBP12.8□□□□□ -0.36
VPS4B-202ENST00000588059 MGAT3Q09327 533 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 PKN1Q16512 942 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 SLC35G1Q2M3R5 365 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 GNPTABQ3T906 1256 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 RUFY4Q6ZNE9 571 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 CYFIP1Q7L576 1253 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 ADGRD2Q7Z7M1 963 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 FCHSD1Q86WN1 690 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 SUGP1Q8IWZ8 645 aaKnown RBP12.8□□□□□ -0.36
VPS4B-202ENST00000588059 INPP4AQ96PE3 977 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-202ENST00000588059 PRRX2Q99811 253 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 CLEC1BQ9P126 229 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 ZBTB47Q9UFB7 747 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-202ENST00000588059 PLAGL2Q9UPG8 496 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 CFAP54Q96N23 3096 aa12.8□□□□□ -0.36
VPS4B-202ENST00000588059 PLXNA3P51805 1871 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 SPATA31C2B4DYI2 1134 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 ENPP3O14638 875 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 DGKIO75912 1065 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 ITGB1P05556 798 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 MFAP1P55081 439 aaKnown RBP12.79□□□□□ -0.36
VPS4B-202ENST00000588059 ZXDAP98168 799 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 COASYQ13057 564 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 NEDD9Q14511 834 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 CBX2Q14781 532 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-202ENST00000588059 UTP14CQ5TAP6 766 aaKnown RBP12.79□□□□□ -0.36
VPS4B-202ENST00000588059 FBXL6Q8N531 539 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 EFHBQ8N7U6 833 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 LINC01599Q8WXQ3 324 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 P2RX5Q93086 422 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 MAD2L2Q9UI95 211 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 MRPL42Q9Y6G3 142 aaKnown RBP12.79□□□□□ -0.36
VPS4B-202ENST00000588059 NRCAMQ92823 1304 aa12.79□□□□□ -0.36
VPS4B-202ENST00000588059 PALM3A6NDB9 673 aaPredicted RBP12.78□□□□□ -0.36
VPS4B-202ENST00000588059 FIBPO43427 364 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 STAM2O75886 525 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 GLP2RO95838 553 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 SEC23AQ15436 765 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 FBXO47Q5MNV8 452 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 IFIT1BQ5T764 474 aaKnown RBP12.78□□□□□ -0.36
VPS4B-202ENST00000588059 TAF2Q6P1X5 1199 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 HOMER1Q86YM7 354 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 SPPL3Q8TCT6 385 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 PPP2R3CQ969Q6 453 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 UBAC1Q9BSL1 405 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 FAM86C1Q9NVL1 165 aa12.78□□□□□ -0.36
VPS4B-202ENST00000588059 USP15Q9Y4E8 981 aaPredicted RBP12.78□□□□□ -0.36
VPS4B-202ENST00000588059 GFRA3O60609 400 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 SDSP20132 328 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 NRIP1P48552 1158 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 VCPP55072 806 aaKnown RBP12.77□□□□□ -0.37
VPS4B-202ENST00000588059 SP4Q02446 784 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 NAALADL2Q58DX5 795 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 TSHZ1Q6ZSZ6 1077 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 CMTR2Q8IYT2 770 aaKnown RBP12.77□□□□□ -0.37
VPS4B-202ENST00000588059 CRIPAKQ8N1N5 446 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 KLHL23Q8NBE8 558 aa12.77□□□□□ -0.37
VPS4B-202ENST00000588059 RILPL2Q969X0 211 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms