RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ZSCAN31Q96LW9 406 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 NFASCO94856 1347 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.35□□□□□ -0.43
CLIP3-203ENST00000586457 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.35□□□□□ -0.43
CLIP3-203ENST00000586457 HAS3O00219 553 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 ST18O60284 1047 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 IQCF3P0C7M6 154 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 SELPP16109 830 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 MARK3P27448 753 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 NONOQ15233 471 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP3-203ENST00000586457 ME3Q16798 604 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 C8orf34Q49A92 452 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 GPR153Q6NV75 609 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 MIS18BP1Q6P0N0 1132 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 OTOP2Q7RTS6 562 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 KRT25Q7Z3Z0 450 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 CKAP2LQ8IYA6 745 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 TBCKQ8TEA7 893 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 LRCH3Q96II8 777 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 RNPEPQ9H4A4 650 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 SETD4Q9NVD3 440 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 KCNJ14Q9UNX9 436 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 TRPC6Q9Y210 931 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 SLC4A7Q9Y6M7 1214 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 UMODL1Q5DID0 1318 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 NRCAMQ92823 1304 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 STK36Q9NRP7 1315 aa12.35□□□□□ -0.43
CLIP3-203ENST00000586457 GSTTP1A0A1W2PQM5 241 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 FAM86B1E9PN63 330 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 FAM86B2P0C5J1 330 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 STAT5BP51692 787 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 EPHB4P54760 987 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 ACTR2P61160 394 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 PPFIA1Q13136 1202 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP3-203ENST00000586457 TMEM240Q5SV17 173 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 ZNF697Q5TEC3 545 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 LRRC8DQ7L1W4 858 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 TRIM50Q86XT4 487 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 DEFB123Q8N688 67 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 FAM184AQ8NB25 1140 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 IL27Q8NEV9 243 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 GTF3C6Q969F1 213 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 UIMC1Q96RL1 719 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 NAP1L4Q99733 375 aaKnown RBP12.34□□□□□ -0.43
CLIP3-203ENST00000586457 WNT8AQ9H1J5 351 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 MSRAQ9UJ68 235 aa12.34□□□□□ -0.43
CLIP3-203ENST00000586457 TRIOBPQ9H2D6 2365 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 RRN3P2A6NIE6 340 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 RSPH10B2B2RC85 870 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 SOX1O00570 391 aaPredicted RBP12.33□□□□□ -0.44
CLIP3-203ENST00000586457 GAS7O60861 476 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 PSAPP07602 524 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 RSPH10BP0C881 870 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 CKBP12277 381 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 KRT2P35908 639 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 KCNJ6P48051 423 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 SLC26A2P50443 739 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 IGBP1P78318 339 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 SMAD3P84022 425 aaKnown RBP12.33□□□□□ -0.44
CLIP3-203ENST00000586457 ZNF200P98182 395 aaPredicted RBP12.33□□□□□ -0.44
CLIP3-203ENST00000586457 KRT76Q01546 638 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 GNL2Q13823 731 aaKnown RBP12.33□□□□□ -0.44
CLIP3-203ENST00000586457 PLPPR4Q7Z2D5 763 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 IL17RAQ96F46 866 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 AIFM3Q96NN9 605 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 SH2B1Q9NRF2 756 aaPredicted RBP12.33□□□□□ -0.44
CLIP3-203ENST00000586457 EMSYQ7Z589 1322 aa12.33□□□□□ -0.44
CLIP3-203ENST00000586457 LTBP2Q14767 1821 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 KIF28PB7ZC32 967 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 M0QZ92 97 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 TREHO43280 583 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 BAG4O95429 457 aaKnown RBP12.32□□□□□ -0.44
CLIP3-203ENST00000586457 SLC34A2O95436 690 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 RPLP2P05387 115 aaKnown RBP12.32□□□□□ -0.44
CLIP3-203ENST00000586457 CIITAP33076 1130 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 ITGB3BPQ13352 177 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-203ENST00000586457 RABEP1Q15276 862 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 GRIK4Q16099 956 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 LETM2Q2VYF4 491 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 ZNF746Q6NUN9 644 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-203ENST00000586457 SWSAP1Q6NVH7 229 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 PDXDC2PQ6P474 469 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 C16orf59Q7L2K0 433 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 SERINC5Q86VE9 423 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 SMAP1Q8IYB5 467 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-203ENST00000586457 DAGLBQ8NCG7 672 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 HERVK_113Q902F9 699 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 PHF20Q9BVI0 1012 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 TEKT3Q9BXF9 490 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 ZNF302Q9NR11 478 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 PCDHA10Q9Y5I2 948 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 SCN10AQ9Y5Y9 1956 aa12.32□□□□□ -0.44
CLIP3-203ENST00000586457 IGLV3-22A0A075B6J6 115 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 POTEB3A0JP26 581 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 WDR64B1ANS9 1081 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 CCNT1O60563 726 aaKnown RBP12.31□□□□□ -0.44
CLIP3-203ENST00000586457 CAND2O75155 1236 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms