RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CTNND2Q9UQB3 1225 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 SYNRGQ9UMZ2 1314 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 CCL15-CCL14A0A0B4J2E2 113 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 RHOBTB3O94955 611 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 CETPP11597 493 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 ERCC5P28715 1186 aaPredicted RBP11.75□□□□□ -0.53
SS18-217ENST00000580958 GTF2A2P52657 109 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 PSMC6P62333 389 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 CYP4A11Q02928 519 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 PDE4DQ08499 809 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 ITGB3BPQ13352 177 aaPredicted RBP11.75□□□□□ -0.53
SS18-217ENST00000580958 CTTNQ14247 550 aaKnown RBP11.75□□□□□ -0.53
SS18-217ENST00000580958 EPHA7Q15375 998 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 CCL15Q16663 113 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 LCE2DQ5TA82 110 aaPredicted RBP11.75□□□□□ -0.53
SS18-217ENST00000580958 B3GNT9Q6UX72 402 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 UNC13DQ70J99 1090 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 VSIG10LQ86VR7 867 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 GPBP1Q86WP2 473 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 ANKRD35Q8N283 1001 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 MED15Q96RN5 788 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 RIT2Q99578 217 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 LRRC27Q9C0I9 530 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 R3HDMLQ9H3Y0 253 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 TUFT1Q9NNX1 390 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 RGL1Q9NZL6 768 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 RBPJLQ9UBG7 517 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 PFASO15067 1338 aa11.75□□□□□ -0.53
SS18-217ENST00000580958 TESPA1A2RU30 521 aaPredicted RBP11.74□□□□□ -0.53
SS18-217ENST00000580958 DHX15O43143 795 aaKnown RBP11.74□□□□□ -0.53
SS18-217ENST00000580958 SLC25A27O95847 323 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 PTMAP06454 111 aaKnown RBP11.74□□□□□ -0.53
SS18-217ENST00000580958 ERCC3P19447 782 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 PRCPP42785 496 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 CNTN2Q02246 1040 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 SEMA3FQ13275 785 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 MTMR1Q13613 665 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 CNNM4Q6P4Q7 775 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 MIER3Q7Z3K6 550 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 NLRX1Q86UT6 975 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 GIMAP8Q8ND71 665 aaPredicted RBP11.74□□□□□ -0.53
SS18-217ENST00000580958 NELFBQ8WX92 580 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 BRI3BPQ8WY22 251 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 DDX12PQ92771 950 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 DNAJC19Q96DA6 116 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 TRIM44Q96DX7 344 aaPredicted RBP11.74□□□□□ -0.53
SS18-217ENST00000580958 MS4A4AQ96JQ5 239 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 FANCLQ9NW38 375 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 PNMA3Q9UL41 463 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 DNM3Q9UQ16 869 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 NFE2L3Q9Y4A8 694 aa11.74□□□□□ -0.53
SS18-217ENST00000580958 NPHP3-ACAD11A0A0J9YXS1 232 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 PVALEFA0A1B0GWK0 134 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 BTBD19C9JJ37 291 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 ASTN1O14525 1302 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 ATP9AO75110 1047 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 COBLO75128 1261 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SLITRK3O94933 977 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 EYA4O95677 639 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 ITGBL1O95965 494 aaPredicted RBP11.73□□□□□ -0.53
SS18-217ENST00000580958 CYP2C8P10632 490 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 FCER1AP12319 257 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 ATP1A3P13637 1013 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 IDEP14735 1019 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 CYP11B2P19099 503 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 COPB2P35606 906 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SLC12A3P55017 1021 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 FANCCQ00597 558 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 PAK1Q13153 545 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 Q3C1V9 767 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SPATA1Q5VX52 437 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SPRYD7Q5W111 196 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 CST9Q5W186 159 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 TPH2Q8IWU9 490 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 DOCK3Q8IZD9 2030 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 ADSSL1Q8N142 457 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SPC24Q8NBT2 197 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 HPS3Q969F9 1004 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 GPRASP2Q96D09 838 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 HSD17B14Q9BPX1 270 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 TBC1D22BQ9NU19 505 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 IFNKQ9P0W0 207 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 MAPK8IP1Q9UQF2 711 aa11.73□□□□□ -0.53
SS18-217ENST00000580958 SOWAHBA6NEL2 793 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 PDHXO00330 501 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 KRT18P05783 430 aaKnown RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 CDC25BP30305 580 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 ALDH5A1P51649 535 aaPredicted RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 HUNKP57058 714 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 ERVK-9P63128 1117 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 ERVK-24P63145 666 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 FSTL1Q12841 308 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 STK4Q13043 487 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 COASYQ13057 564 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 PDAP1Q13442 181 aaKnown RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 STIM1Q13586 685 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 HSP90AA4PQ58FG1 418 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 ARSHQ5FYA8 562 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.72□□□□□ -0.53
SS18-217ENST00000580958 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms