RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RANBP2P49792 3224 aaKnown RBP22.14■■□□□ 1.13
SS18-209ENST00000578595 NFASCO94856 1347 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 C17orf102A2RUQ5 167 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 HAS3O00219 553 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 ITGB3BPQ13352 177 aaPredicted RBP22.13■■□□□ 1.13
SS18-209ENST00000578595 BFSP2Q13515 415 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 SESTD1Q86VW0 696 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 SCLYQ96I15 445 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 AZI2Q9H6S1 392 aa22.13■■□□□ 1.13
SS18-209ENST00000578595 SH2B1Q9NRF2 756 aaPredicted RBP22.13■■□□□ 1.13
SS18-209ENST00000578595 IPO5O00410 1097 aaKnown RBP22.12■■□□□ 1.13
SS18-209ENST00000578595 SMIM10L2AP0DMW4 78 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 SMIM10L2BP0DMW5 78 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 ACRP10323 421 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 ACTR2P61160 394 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 SHHQ15465 462 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 INF2Q27J81 1249 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 C9orf50Q5SZB4 431 aa22.12■■□□□ 1.13
SS18-209ENST00000578595 RNPC3Q96LT9 517 aaKnown RBP22.12■■□□□ 1.13
SS18-209ENST00000578595 IGLV3-22A0A075B6J6 115 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 GSTTP1A0A1W2PQM5 241 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 BACH1O14867 736 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 FDPSP14324 419 aaKnown RBP22.11■■□□□ 1.13
SS18-209ENST00000578595 KRT2P35908 639 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 ZNF200P98182 395 aaPredicted RBP22.11■■□□□ 1.13
SS18-209ENST00000578595 ST3GAL1Q11201 340 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 PIK3AP1Q6ZUJ8 805 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 CRYGNQ8WXF5 182 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 ATP6V0A1Q93050 837 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 TBC1D32Q96NH3 1257 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 WNT8AQ9H1J5 351 aa22.11■■□□□ 1.13
SS18-209ENST00000578595 FXR1P51114 621 aaKnown RBP eCLIP22.1■■□□□ 1.13
SS18-209ENST00000578595 USP11P51784 963 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 EPHB4P54760 987 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 NPY5RQ15761 445 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 LETM2Q2VYF4 491 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 DEFB128Q7Z7B8 93 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 FAM184AQ8NB25 1140 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 OXER1Q8TDS5 423 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 SMARCAD1Q9H4L7 1026 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 ERAP1Q9NZ08 941 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 TET1Q8NFU7 2136 aa22.1■■□□□ 1.13
SS18-209ENST00000578595 EVPLQ92817 2033 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 TDP2O95551 362 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 CIITAP33076 1130 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 PSRC1Q6PGN9 363 aaPredicted RBP22.09■■□□□ 1.13
SS18-209ENST00000578595 CAGE1Q8TC20 777 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.09■■□□□ 1.13
SS18-209ENST00000578595 TBC1D22BQ9NU19 505 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 SETD4Q9NVD3 440 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 TRPC6Q9Y210 931 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 SAMM50Q9Y512 469 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 GBF1Q92538 1859 aa22.09■■□□□ 1.13
SS18-209ENST00000578595 EMSYQ7Z589 1322 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 M0R2N6 131 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 GNAT1P11488 350 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 GUCY1B3Q02153 619 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 PPFIA1Q13136 1202 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 PTK7Q13308 1070 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 KRT40Q6A162 431 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 MIS18BP1Q6P0N0 1132 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 LLPHQ9BRT6 129 aaKnown RBP22.08■■□□□ 1.13
SS18-209ENST00000578595 RNPEPQ9H4A4 650 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 IL23AQ9NPF7 189 aa22.08■■□□□ 1.13
SS18-209ENST00000578595 LOXHD1Q8IVV2 1947 aa22.08■■□□□ 1.12
SS18-209ENST00000578595 PITPNM1O00562 1244 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 CHMP2AO43633 222 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 GAS7O60861 476 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 IGBP1P78318 339 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 HMGN5P82970 282 aaKnown RBP22.07■■□□□ 1.12
SS18-209ENST00000578595 NR5A1Q13285 461 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 SAFBQ15424 915 aaKnown RBP eCLIP22.07■■□□□ 1.12
SS18-209ENST00000578595 FAM160B1Q5W0V3 765 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 NEK8Q86SG6 692 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 RPUSD2Q8IZ73 545 aaKnown RBP22.07■■□□□ 1.12
SS18-209ENST00000578595 LRCH3Q96II8 777 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 C8orf76Q96K31 380 aa22.07■■□□□ 1.12
SS18-209ENST00000578595 FTOQ9C0B1 505 aaKnown RBP eCLIP22.07■■□□□ 1.12
SS18-209ENST00000578595 DDX25Q9UHL0 483 aaKnown RBP22.07■■□□□ 1.12
SS18-209ENST00000578595 SOX1O00570 391 aaPredicted RBP22.06■■□□□ 1.12
SS18-209ENST00000578595 MSH4O15457 936 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 TREHO43280 583 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 MARCH6O60337 910 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 CCNE2O96020 404 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 MMP1P03956 469 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 STAT5BP51692 787 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 KRT76Q01546 638 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 GNL2Q13823 731 aaKnown RBP22.06■■□□□ 1.12
SS18-209ENST00000578595 HIC1Q14526 733 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 LRCH2Q5VUJ6 765 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 ZNF365Q70YC5 407 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 CKAP2LQ8IYA6 745 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 DIS3L2Q8IYB7 885 aaKnown RBP22.06■■□□□ 1.12
SS18-209ENST00000578595 DHX38Q92620 1227 aaKnown RBP22.06■■□□□ 1.12
SS18-209ENST00000578595 TEKT3Q9BXF9 490 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 BACH2Q9BYV9 841 aa22.06■■□□□ 1.12
SS18-209ENST00000578595 ZBBXA8MT70 800 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 CCNT1O60563 726 aaKnown RBP22.05■■□□□ 1.12
SS18-209ENST00000578595 IQCF3P0C7M6 154 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 THPOP40225 353 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms