RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 BCAS3Q9H6U6 928 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 hCG_1642624A0A1W2PR95 340 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 SPDYE3A6NKU9 549 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 RSPH10B2B2RC85 870 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 ARHGEF15O94989 841 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 RSPH10BP0C881 870 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 TAP1Q03518 808 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 APOA5Q6Q788 366 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 SKAP1Q86WV1 359 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 GPRASP2Q96D09 838 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 EHMT1Q9H9B1 1298 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 USP34Q70CQ2 3546 aa15.72■□□□□ 0.11
CCDC40-216ENST00000576241 ST18O60284 1047 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 LPXNO60711 386 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 CDC45O75419 566 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 LGR5O75473 907 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 HOXC8P31273 242 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 DEFB103AP81534 67 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 HIC1Q14526 733 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 KRT32Q14532 448 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 UBE2SQ16763 222 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 UTP14CQ5TAP6 766 aaKnown RBP15.71■□□□□ 0.11
CCDC40-216ENST00000576241 TRAF7Q6Q0C0 670 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 TRIM50Q86XT4 487 aa15.71■□□□□ 0.11
CCDC40-216ENST00000576241 RBM28Q9NW13 759 aaKnown RBP15.71■□□□□ 0.11
CCDC40-216ENST00000576241 CFAP54Q96N23 3096 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 TREHO43280 583 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 CAND2O75155 1236 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 MTMR1Q13613 665 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 MBTPS1Q14703 1052 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 DHX32Q7L7V1 743 aaKnown RBP15.7■□□□□ 0.1
CCDC40-216ENST00000576241 RAD9AQ99638 391 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 RNPEPQ9H4A4 650 aa15.7■□□□□ 0.1
CCDC40-216ENST00000576241 COL4A4P53420 1690 aaPredicted RBP15.7■□□□□ 0.1
CCDC40-216ENST00000576241 MYH7BA7E2Y1 1941 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 ZBTB43O43298 467 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 DCXO43602 365 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 GJB5O95377 273 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 HMGB1P09429 215 aaKnown RBP15.69■□□□□ 0.1
CCDC40-216ENST00000576241 IL9P15248 144 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 ITGB5P18084 799 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 TCF7P36402 384 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-216ENST00000576241 ARHGAP4P98171 946 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 RTN1Q16799 776 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 TCTN1Q2MV58 587 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 SPRED2Q7Z698 418 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 TMCO2Q7Z6W1 182 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-216ENST00000576241 UBE2ZQ9H832 354 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-216ENST00000576241 SETD4Q9NVD3 440 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 PCDHA6Q9UN73 950 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 PCDHA8Q9Y5H6 950 aa15.69■□□□□ 0.1
CCDC40-216ENST00000576241 POTEB3A0JP26 581 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 LCHNA4D1U4 455 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 AMHP03971 560 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 CTSHP09668 335 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 KCNA2P16389 499 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 NAPAP54920 295 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 FGD1P98174 961 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 FOXK2Q01167 660 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 EXOSC10Q01780 885 aaKnown RBP15.68■□□□□ 0.1
CCDC40-216ENST00000576241 TSGA10IPQ3SY00 556 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 LEXMQ3ZCV2 418 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 PPP1R18Q6NYC8 613 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 POTEBQ6S5H4 581 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 HFE2Q6ZVN8 426 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 TEX2Q8IWB9 1127 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 DBF4BQ8NFT6 615 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-216ENST00000576241 SEPT1Q8WYJ6 367 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 SEPT8Q92599 483 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 TCEANC2Q96MN5 208 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 UBIAD1Q9Y5Z9 338 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 CNTNAP5Q8WYK1 1306 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 NRCAMQ92823 1304 aa15.68■□□□□ 0.1
CCDC40-216ENST00000576241 TET1Q8NFU7 2136 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 SPTBN4Q9H254 2564 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-216ENST00000576241 KLF18A0A0U1RQI7 1052 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 GOLGA8AA7E2F4 631 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 GOLGA8BA8MQT2 603 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 MAFGO15525 162 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 ATP9AO75110 1047 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 KCNA5P22460 613 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 ADCY7P51828 1080 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 PLEKHG4Q58EX7 1191 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 WWC2Q6AWC2 1192 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 FAM117BQ6P1L5 589 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 RASEFQ8IZ41 740 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 MYOCDQ8IZQ8 938 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 LMBR1Q8WVP7 490 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 GLG1Q92896 1179 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 JADE2Q9NQC1 790 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 PKD2L1Q9P0L9 805 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 BRPF3Q9ULD4 1205 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 NAP1L2Q9ULW6 460 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-216ENST00000576241 TELO2Q9Y4R8 837 aa15.67■□□□□ 0.1
CCDC40-216ENST00000576241 TRIP12Q14669 1992 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-216ENST00000576241 hCG_1984214I3L0E3 225 aa15.66■□□□□ 0.1
CCDC40-216ENST00000576241 FOSP01100 380 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 ADCK5Q3MIX3 580 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms