RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SNTG2Q9NY99 539 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 FAM221BA6H8Z2 402 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 GSTA4O15217 222 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 CYP1A1P04798 512 aaPredicted RBP4.78□□□□□ -1.64
NUP88-209ENST00000574855 FAHP16930 419 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 CNR2P34972 360 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 EPHA5P54756 1037 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 RTP5Q14D33 572 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 PAN2Q504Q3 1202 aaKnown RBP4.78□□□□□ -1.64
NUP88-209ENST00000574855 VASNQ6EMK4 673 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 TMC5Q6UXY8 1006 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 EP400NLQ6ZTU2 488 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 KCTD1Q719H9 257 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 NLGN4XQ8N0W4 816 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 LGI4Q8N135 537 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 PMFBP1Q8TBY8 1022 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 ZSWIM3Q96MP5 696 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 BDH2Q9BUT1 245 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 TMEM168Q9H0V1 697 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 CATSPERZQ9NTU4 200 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 CROTQ9UKG9 612 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 MRPS23Q9Y3D9 190 aaKnown RBP4.78□□□□□ -1.64
NUP88-209ENST00000574855 PCDHA8Q9Y5H6 950 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 DUSP10Q9Y6W6 482 aa4.78□□□□□ -1.64
NUP88-209ENST00000574855 CCDC163A0A0D9SF12 145 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 C9orf118A6NHY6 69 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 WNT9AO14904 365 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 LTFP02788 710 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 ENO2P09104 434 aaPredicted RBP4.77□□□□□ -1.65
NUP88-209ENST00000574855 C6orf222P0C671 652 aaPredicted RBP4.77□□□□□ -1.65
NUP88-209ENST00000574855 ZNF28P17035 718 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 BUD31P41223 144 aaPredicted RBP4.77□□□□□ -1.65
NUP88-209ENST00000574855 ST5P78524 1137 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 GPR19Q15760 415 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 CERS3Q8IU89 383 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 PCDH19Q8TAB3 1148 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 FBXW5Q969U6 566 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 EXOC2Q96KP1 924 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 DLL4Q9NR61 685 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 FTSJ1Q9UET6 329 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 WASF3Q9UPY6 502 aa4.77□□□□□ -1.65
NUP88-209ENST00000574855 EFCAB14O75071 495 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 CKMP06732 381 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 SRGAP2CP0DJJ0 459 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 CANXP27824 592 aaKnown RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 MLLT6P55198 1093 aaPredicted RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 CRY1Q16526 586 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 SKOR2Q2VWA4 1001 aaPredicted RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 FAM47CQ5HY64 1035 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 TRMT10BQ6PF06 316 aaKnown RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 ARHGAP36Q6ZRI8 547 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 C16orf59Q7L2K0 433 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 PROSER1Q86XN7 944 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 ZC3H7AQ8IWR0 971 aaKnown RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 SREK1Q8WXA9 508 aaKnown RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 KISS1RQ969F8 398 aaPredicted RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 RBPJLQ9UBG7 517 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 CNOT11Q9UKZ1 510 aaKnown RBP4.76□□□□□ -1.65
NUP88-209ENST00000574855 INVSQ9Y283 1065 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 TELO2Q9Y4R8 837 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 PCDHA9Q9Y5H5 950 aa4.76□□□□□ -1.65
NUP88-209ENST00000574855 TCRBV5S4A2TA0A5A2 114 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 ARVCFO00192 962 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 FBXO21O94952 628 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 CRTAMO95727 393 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 CHGBP05060 677 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 PYGMP11217 842 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 BTBD8Q5XKL5 378 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 CD276Q5ZPR3 534 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 PRRT2Q7Z6L0 340 aaPredicted RBP4.75□□□□□ -1.65
NUP88-209ENST00000574855 OSTM1Q86WC4 334 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 DTX3Q8N9I9 347 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 ZSWIM2Q8NEG5 633 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 THAP3Q8WTV1 239 aaPredicted RBP4.75□□□□□ -1.65
NUP88-209ENST00000574855 MAGEB10Q96LZ2 347 aaPredicted RBP4.75□□□□□ -1.65
NUP88-209ENST00000574855 YTHDC1Q96MU7 727 aaKnown RBP4.75□□□□□ -1.65
NUP88-209ENST00000574855 CD244Q9BZW8 370 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 BARX1Q9HBU1 254 aaPredicted RBP4.75□□□□□ -1.65
NUP88-209ENST00000574855 ARHGAP20Q9P2F6 1191 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 NDOR1Q9UHB4 597 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 SRPK3Q9UPE1 567 aa4.75□□□□□ -1.65
NUP88-209ENST00000574855 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.74□□□□□ -1.65
NUP88-209ENST00000574855 K7ESM1 405 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 ACOT7O00154 380 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 PDE6AP16499 860 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 PTPN1P18031 435 aaKnown RBP4.74□□□□□ -1.65
NUP88-209ENST00000574855 GLRBP48167 497 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 PFKPQ01813 784 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 SURF1Q15526 300 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 SMAD2Q15796 467 aaKnown RBP4.74□□□□□ -1.65
NUP88-209ENST00000574855 NFE2L2Q16236 605 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 SKIDA1Q1XH10 827 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 PLEKHH3Q7Z736 793 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 JMYQ8N9B5 988 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 IGDCC4Q8TDY8 1250 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 SH3RF2Q8TEC5 729 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 DNAJC2Q99543 621 aaKnown RBP4.74□□□□□ -1.65
NUP88-209ENST00000574855 RIC8BQ9NVN3 520 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 ATP23Q9Y6H3 246 aa4.74□□□□□ -1.65
NUP88-209ENST00000574855 CADPSQ9ULU8 1353 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms