RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NLRC5Q86WI3 1866 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 KAT6AQ92794 2004 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 SH2B2O14492 632 aaPredicted RBP24.24■■□□□ 1.47
VPS53-216ENST00000574029 MCM5P33992 734 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 SP4Q02446 784 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 EPC2Q52LR7 807 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 MRPL38Q96DV4 380 aaKnown RBP24.24■■□□□ 1.47
VPS53-216ENST00000574029 YME1L1Q96TA2 773 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 RALGAPA2Q2PPJ7 1873 aa24.24■■□□□ 1.47
VPS53-216ENST00000574029 ATP9AO75110 1047 aa24.23■■□□□ 1.47
VPS53-216ENST00000574029 KCNA2P16389 499 aa24.23■■□□□ 1.47
VPS53-216ENST00000574029 TCF7P36402 384 aaPredicted RBP24.23■■□□□ 1.47
VPS53-216ENST00000574029 RPAINQ86UA6 219 aa24.23■■□□□ 1.47
VPS53-216ENST00000574029 CDHR1Q96JP9 859 aa24.23■■□□□ 1.47
VPS53-216ENST00000574029 LSG1Q9H089 658 aaKnown RBP24.23■■□□□ 1.47
VPS53-216ENST00000574029 PSTPIP2Q9H939 334 aa24.23■■□□□ 1.47
VPS53-216ENST00000574029 CCDC69A6NI79 296 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 UPP2O95045 317 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 CHRNA1P02708 482 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 ITGB5P18084 799 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 LIFRP42702 1097 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 COL9A3Q14050 684 aaPredicted RBP24.22■■□□□ 1.47
VPS53-216ENST00000574029 LEXMQ3ZCV2 418 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 NFXL1Q6ZNB6 911 aa24.22■■□□□ 1.47
VPS53-216ENST00000574029 CMTR1Q8N1G2 835 aaKnown RBP24.22■■□□□ 1.47
VPS53-216ENST00000574029 IFIH1Q9BYX4 1025 aaKnown RBP24.22■■□□□ 1.47
VPS53-216ENST00000574029 GSTTP1A0A1W2PQM5 241 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 H3BNC9 293 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 CALM1P0DP23 149 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 CALM2P0DP24 149 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 CALM3P0DP25 149 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 PTPROQ16827 1216 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 TAF2Q6P1X5 1199 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 EHMT1Q9H9B1 1298 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 UBIAD1Q9Y5Z9 338 aa24.21■■□□□ 1.47
VPS53-216ENST00000574029 SLC27A2O14975 620 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 RXRAP19793 462 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 GPM6BQ13491 265 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 RUFY4Q6ZNE9 571 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 TMEM192Q8IY95 271 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.2■■□□□ 1.46
VPS53-216ENST00000574029 SEPT1Q8WYJ6 367 aa24.2■■□□□ 1.46
VPS53-216ENST00000574029 KHSRPQ92945 711 aaKnown RBP eCLIP24.2■■□□□ 1.46
VPS53-216ENST00000574029 KCNA5P22460 613 aa24.19■■□□□ 1.46
VPS53-216ENST00000574029 MGAT3Q09327 533 aa24.19■■□□□ 1.46
VPS53-216ENST00000574029 LRFN3Q9BTN0 628 aa24.19■■□□□ 1.46
VPS53-216ENST00000574029 CD320Q9NPF0 282 aa24.19■■□□□ 1.46
VPS53-216ENST00000574029 ERAP1Q9NZ08 941 aa24.19■■□□□ 1.46
VPS53-216ENST00000574029 BRWD1Q9NSI6 2320 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 MAFGO15525 162 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 IRX6P78412 446 aaPredicted RBP24.18■■□□□ 1.46
VPS53-216ENST00000574029 PPFIA1Q13136 1202 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 MTMR1Q13613 665 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 NECTIN1Q15223 517 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 UBE2SQ16763 222 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 TIGD5Q53EQ6 642 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 IL17RAQ96F46 866 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 JADE2Q9NQC1 790 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 SLC12A7Q9Y666 1083 aa24.18■■□□□ 1.46
VPS53-216ENST00000574029 hCG_1642624A0A1W2PR95 340 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 MBLAC1A4D2B0 266 aaPredicted RBP24.17■■□□□ 1.46
VPS53-216ENST00000574029 SPDYE3A6NKU9 549 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 GHRP10912 638 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 LPIN1Q14693 890 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 GRIK4Q16099 956 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 MARCH8Q5T0T0 291 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 CREB3L3Q68CJ9 461 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 TMTC3Q6ZXV5 915 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 RSPH3Q86UC2 560 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 FAM178BQ8IXR5 827 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 FANCBQ8NB91 859 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 BANK1Q8NDB2 785 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 NEK9Q8TD19 979 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 ESYT1Q9BSJ8 1104 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 SMARCAD1Q9H4L7 1026 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 TUBE1Q9UJT0 475 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 PCDHA6Q9UN73 950 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 PCDHA8Q9Y5H6 950 aa24.17■■□□□ 1.46
VPS53-216ENST00000574029 MARK3P27448 753 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 PLA2G5P39877 138 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 TMEM31Q5JXX7 168 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 SGMS1Q86VZ5 419 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 RAB11FIP4Q86YS3 637 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 GLG1Q92896 1179 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 PKD2L1Q9P0L9 805 aa24.16■■□□□ 1.46
VPS53-216ENST00000574029 C5orf67F2Z3F1 127 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 PI4K2BG5E9Z4 385 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 LINC00271P0C7V0 271 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 COL19A1Q14993 1142 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 CCDC82Q8N4S0 544 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 FIBCD1Q8N539 461 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 DNAJB3Q8WWF6 145 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 C11orf16Q9NQ32 467 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 ATG2AQ2TAZ0 1938 aa24.15■■□□□ 1.46
VPS53-216ENST00000574029 GRXCR2A6NFK2 248 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 ENPP3O14638 875 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 GPR37L1O60883 481 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 IL9P15248 144 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 PUS10Q3MIT2 529 aaKnown RBP24.14■■□□□ 1.45
VPS53-216ENST00000574029 TCEAL5Q5H9L2 206 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms