RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 CIITAP33076 1130 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 NONOQ15233 471 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN6-209ENST00000569336 PSRC1Q6PGN9 363 aaPredicted RBP11.15□□□□□ -0.62
CLN6-209ENST00000569336 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN6-209ENST00000569336 NSUN7Q8NE18 718 aaKnown RBP11.15□□□□□ -0.62
CLN6-209ENST00000569336 CAGE1Q8TC20 777 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 RASGRP4Q8TDF6 673 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 SEPT1Q8WYJ6 367 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 TNPO1Q92973 898 aaKnown RBP11.15□□□□□ -0.62
CLN6-209ENST00000569336 TBC1D32Q96NH3 1257 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 AIFM3Q96NN9 605 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 NAP1L4Q99733 375 aaKnown RBP11.15□□□□□ -0.62
CLN6-209ENST00000569336 C16orf70Q9BSU1 422 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 ALG1Q9BT22 464 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 AZI2Q9H6S1 392 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 AGO4Q9HCK5 861 aaKnown RBP11.15□□□□□ -0.62
CLN6-209ENST00000569336 TBC1D22BQ9NU19 505 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 ERAP1Q9NZ08 941 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 PKD2L1Q9P0L9 805 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 STXBP5LQ9Y2K9 1186 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 CDH23Q9H251 3354 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 COL6A3P12111 3177 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 FAM86B1E9PN63 330 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 M0R2N6 131 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 IPO5O00410 1097 aaKnown RBP11.14□□□□□ -0.63
CLN6-209ENST00000569336 ATP9AO75110 1047 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 PFKMP08237 780 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 FAM86B2P0C5J1 330 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 GNAT1P11488 350 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 RFC2P35250 354 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 MCM2P49736 904 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 SLC26A2P50443 739 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 HMGN5P82970 282 aaKnown RBP11.14□□□□□ -0.63
CLN6-209ENST00000569336 KRT76Q01546 638 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 PRR16Q569H4 304 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 MOXD1Q6UVY6 613 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 Q7L0L9 218 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 RETREG2Q8NC44 543 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 CYP2W1Q8TAV3 490 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 TBCKQ8TEA7 893 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 GLG1Q92896 1179 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 ZNF577Q9BSK1 485 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 MTIF3Q9H2K0 278 aaKnown RBP11.14□□□□□ -0.63
CLN6-209ENST00000569336 SMARCAD1Q9H4L7 1026 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 PRDM6Q9NQX0 595 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 HDAC6Q9UBN7 1215 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 KIF3AQ9Y496 699 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 KIAA1671Q9BY89 1806 aa11.14□□□□□ -0.63
CLN6-209ENST00000569336 C17orf102A2RUQ5 167 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 PARNO95453 639 aaKnown RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 SMIM10L2AP0DMW4 78 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 SMIM10L2BP0DMW5 78 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 ARP10275 920 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 CYP2C9P11712 490 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 GCFC2P16383 781 aaKnown RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 ITGB8P26012 769 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 CYP2C18P33260 490 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 KRT2P35908 639 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 ACTR2P61160 394 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 PTK7Q13308 1070 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 ITGB3BPQ13352 177 aaPredicted RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 NPY5RQ15761 445 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 LRIT3Q3SXY7 679 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 UTP14CQ5TAP6 766 aaKnown RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 FAM160B1Q5W0V3 765 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 GDF6Q6KF10 455 aaPredicted RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 TRIM50Q86XT4 487 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 CCDC83Q8IWF9 413 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 SMAP1Q8IYB5 467 aaPredicted RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 RPUSD2Q8IZ73 545 aaKnown RBP11.13□□□□□ -0.63
CLN6-209ENST00000569336 AFAP1L1Q8TED9 768 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 BCAS3Q9H6U6 928 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 KCNJ14Q9UNX9 436 aa11.13□□□□□ -0.63
CLN6-209ENST00000569336 NRCAMQ92823 1304 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 GSTTP1A0A1W2PQM5 241 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 ADAMTS3O15072 1205 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 JAK2O60674 1132 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 LGR5O75473 907 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 MMP1P03956 469 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 RPLP2P05387 115 aaKnown RBP11.12□□□□□ -0.63
CLN6-209ENST00000569336 FDPSP14324 419 aaKnown RBP11.12□□□□□ -0.63
CLN6-209ENST00000569336 CSF2RAP15509 400 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 HOXC8P31273 242 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 RBL2Q08999 1139 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 SAFBQ15424 915 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN6-209ENST00000569336 ZNF746Q6NUN9 644 aaPredicted RBP11.12□□□□□ -0.63
CLN6-209ENST00000569336 NEK8Q86SG6 692 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 FAM184AQ8NB25 1140 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 ATP6V0A1Q93050 837 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 RNPC3Q96LT9 517 aaKnown RBP11.12□□□□□ -0.63
CLN6-209ENST00000569336 RIT2Q99578 217 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 IL23AQ9NPF7 189 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 EYSQ5T1H1 3165 aa11.12□□□□□ -0.63
CLN6-209ENST00000569336 UMODL1Q5DID0 1318 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 COL4A4P53420 1690 aaPredicted RBP11.11□□□□□ -0.63
CLN6-209ENST00000569336 TTC3P53804 2025 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 FNDC1Q4ZHG4 1894 aaPredicted RBP11.11□□□□□ -0.63
CLN6-209ENST00000569336 CYP3A7-CYP3A51PA0A087WV96 503 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 WDR64B1ANS9 1081 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms