RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SSRP1Q08945 709 aaKnown RBP23.15■■□□□ 1.3
CLK3-225ENST00000569063 GPNMBQ14956 572 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 TRIM22Q8IYM9 498 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 CCDC148Q8NFR7 591 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 BICD2Q8TD16 824 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 ATP6V0A1Q93050 837 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 WNT8BQ93098 351 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 PBX4Q9BYU1 374 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 AGO4Q9HCK5 861 aaKnown RBP23.15■■□□□ 1.3
CLK3-225ENST00000569063 JPH1Q9HDC5 661 aaPredicted RBP23.15■■□□□ 1.3
CLK3-225ENST00000569063 CPLX1O14810 134 aa23.14■■□□□ 1.29
CLK3-225ENST00000569063 GNAT1P11488 350 aa23.14■■□□□ 1.29
CLK3-225ENST00000569063 TRAF7Q6Q0C0 670 aa23.14■■□□□ 1.29
CLK3-225ENST00000569063 TIFAQ96CG3 184 aa23.14■■□□□ 1.29
CLK3-225ENST00000569063 FTOQ9C0B1 505 aaKnown RBP eCLIP23.14■■□□□ 1.29
CLK3-225ENST00000569063 SLC9A2Q9UBY0 812 aa23.14■■□□□ 1.29
CLK3-225ENST00000569063 TRIP12Q14669 1992 aaPredicted RBP23.13■■□□□ 1.29
CLK3-225ENST00000569063 CXCL10P02778 98 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 ZNF76P36508 570 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 PBX2P40425 430 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 ADAM17P78536 824 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 STK3Q13188 491 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 ZNF618Q5T7W0 954 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 SDF4Q9BRK5 362 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 SMARCAD1Q9H4L7 1026 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 SETD4Q9NVD3 440 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 ERAP1Q9NZ08 941 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 VPS54Q9P1Q0 977 aa23.13■■□□□ 1.29
CLK3-225ENST00000569063 COL6A3P12111 3177 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 ZBBXA8MT70 800 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 FAM86B1E9PN63 330 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 TREHO43280 583 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 DEXIO95424 95 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 FAM86B2P0C5J1 330 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 ITGB3BPQ13352 177 aaPredicted RBP23.12■■□□□ 1.29
CLK3-225ENST00000569063 RAB30Q15771 203 aa23.12■■□□□ 1.29
CLK3-225ENST00000569063 CPLX2Q6PUV4 134 aaKnown RBP23.12■■□□□ 1.29
CLK3-225ENST00000569063 CDX2Q99626 313 aaPredicted RBP23.12■■□□□ 1.29
CLK3-225ENST00000569063 EMSYQ7Z589 1322 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 NRCAMQ92823 1304 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 IGLV3-22A0A075B6J6 115 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 NBNO60934 754 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 LGR5O75473 907 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 BAIAP3O94812 1187 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 THPOP40225 353 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 FAM177A1Q8N128 213 aaPredicted RBP23.11■■□□□ 1.29
CLK3-225ENST00000569063 GLG1Q92896 1179 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 ZNF576Q9H609 170 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 MSRAQ9UJ68 235 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 TPCN1Q9ULQ1 816 aa23.11■■□□□ 1.29
CLK3-225ENST00000569063 CAND2O75155 1236 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 ATP2A2P16615 1042 aaKnown RBP23.1■■□□□ 1.29
CLK3-225ENST00000569063 NLRP5P59047 1200 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 ACTR2P61160 394 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 SCRN1Q12765 414 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 ANKRD1Q15327 319 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 PLA2G4DQ86XP0 818 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 PHOSPHO2Q8TCD6 241 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 LMBR1Q8WVP7 490 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 PCYT2Q99447 389 aa23.1■■□□□ 1.29
CLK3-225ENST00000569063 PFKFB2O60825 505 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 ATG7O95352 703 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 CIITAP33076 1130 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 MBTPS1Q14703 1052 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 CNKSR3Q6P9H4 555 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 RASGRP4Q8TDF6 673 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 SLC9A7Q96T83 725 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 SLKQ9H2G2 1235 aaPredicted RBP23.09■■□□□ 1.29
CLK3-225ENST00000569063 PCDHA11Q9Y5I1 949 aa23.09■■□□□ 1.29
CLK3-225ENST00000569063 RSPH10B2B2RC85 870 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 IPO5O00410 1097 aaKnown RBP23.08■■□□□ 1.29
CLK3-225ENST00000569063 DHX15O43143 795 aaKnown RBP23.08■■□□□ 1.29
CLK3-225ENST00000569063 CDKL5O76039 1030 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 SEC24BO95487 1268 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 RSPH10BP0C881 870 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 MARK3P27448 753 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 AK2P54819 239 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 SETQ01105 290 aaPredicted RBP23.08■■□□□ 1.29
CLK3-225ENST00000569063 PLPPR4Q7Z2D5 763 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 AZI2Q9H6S1 392 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 PCDHA4Q9UN74 947 aa23.08■■□□□ 1.29
CLK3-225ENST00000569063 YBX2Q9Y2T7 364 aaKnown RBP23.08■■□□□ 1.29
CLK3-225ENST00000569063 USP11P51784 963 aa23.07■■□□□ 1.28
CLK3-225ENST00000569063 RABGGTBP53611 331 aa23.07■■□□□ 1.28
CLK3-225ENST00000569063 PPFIA1Q13136 1202 aa23.07■■□□□ 1.28
CLK3-225ENST00000569063 GRIN2CQ14957 1233 aa23.07■■□□□ 1.28
CLK3-225ENST00000569063 TET1Q8NFU7 2136 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 IGKV6D-21A0A0A0MT36 114 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 ABHD14A-ACY1A0A1B0GW23 586 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 MBLAC1A4D2B0 266 aaPredicted RBP23.06■■□□□ 1.28
CLK3-225ENST00000569063 M0R2N6 131 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 CCNE2O96020 404 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 STAT5BP51692 787 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 GRIK4Q16099 956 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 GALNT17Q6IS24 598 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 RPAINQ86UA6 219 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 DAGLBQ8NCG7 672 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 MYLIPQ8WY64 445 aa23.06■■□□□ 1.28
CLK3-225ENST00000569063 TNPO1Q92973 898 aaKnown RBP23.06■■□□□ 1.28
CLK3-225ENST00000569063 AIFM3Q96NN9 605 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms