RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 RILPL1Q5EBL4 403 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 BRAPQ7Z569 592 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 RDM1Q8NG50 284 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 KAT2BQ92831 832 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 SMARCAD1Q9H4L7 1026 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 TUT1Q9H6E5 874 aaKnown RBP24.83■■□□□ 1.57
CLN3-234ENST00000568472 AZI2Q9H6S1 392 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 FOXD4L1Q9NU39 408 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 DCDC2CA8MYV0 355 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 HAS3O00219 553 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 PSMD10O75832 226 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 SFNP31947 248 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 PSEN2P49810 448 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 NBPF20Q3BBV1 942 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 MIS18BP1Q6P0N0 1132 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 TNPO1Q92973 898 aaKnown RBP24.82■■□□□ 1.56
CLN3-234ENST00000568472 GRIN2DO15399 1336 aa24.82■■□□□ 1.56
CLN3-234ENST00000568472 VPS37CA5D8V6 355 aaPredicted RBP24.81■■□□□ 1.56
CLN3-234ENST00000568472 WDR64B1ANS9 1081 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 DDX39AO00148 427 aaKnown RBP24.81■■□□□ 1.56
CLN3-234ENST00000568472 LGR5O75473 907 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 CCNE2O96020 404 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 ZNF286BP0CG31 522 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 SLC26A2P50443 739 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 JAK3P52333 1124 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 PSMC6P62333 389 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 MFSD10Q14728 455 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 CALCRLQ16602 461 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 TTC38Q5R3I4 469 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 ABHD15Q6UXT9 468 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 PLPPR4Q7Z2D5 763 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 SESTD1Q86VW0 696 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 GLG1Q92896 1179 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 ERAP1Q9NZ08 941 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 ATP11BQ9Y2G3 1177 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 PCDHA10Q9Y5I2 948 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 EMSYQ7Z589 1322 aa24.81■■□□□ 1.56
CLN3-234ENST00000568472 TLR3O15455 904 aaKnown RBP24.8■■□□□ 1.56
CLN3-234ENST00000568472 STX6O43752 255 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 PSAPP07602 524 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 ATP2B1P20020 1258 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 TLE2Q04725 743 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 KIAA0753Q2KHM9 967 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 TRIM60Q495X7 471 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 UTP14CQ5TAP6 766 aaKnown RBP24.8■■□□□ 1.56
CLN3-234ENST00000568472 FAM160B1Q5W0V3 765 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 POTEDQ86YR6 584 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 C7orf31Q8N865 590 aa24.8■■□□□ 1.56
CLN3-234ENST00000568472 IGKV6D-21A0A0A0MT36 114 aa24.79■■□□□ 1.56
CLN3-234ENST00000568472 SUPT20HL2P0C7V6 817 aa24.79■■□□□ 1.56
CLN3-234ENST00000568472 MCM7P33993 719 aa24.79■■□□□ 1.56
CLN3-234ENST00000568472 HAS1Q92839 578 aa24.79■■□□□ 1.56
CLN3-234ENST00000568472 TELO2Q9Y4R8 837 aa24.79■■□□□ 1.56
CLN3-234ENST00000568472 STAT5BP51692 787 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 PPP2R5CQ13362 524 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 B3GNT9Q6UX72 402 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 AFAP1L1Q8TED9 768 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 MTMR9Q96QG7 549 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 UIMC1Q96RL1 719 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 ZSCAN16Q9H4T2 348 aaPredicted RBP24.78■■□□□ 1.56
CLN3-234ENST00000568472 DISC1Q9NRI5 854 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 PCDHA12Q9UN75 941 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 SAMM50Q9Y512 469 aa24.78■■□□□ 1.56
CLN3-234ENST00000568472 LAD1O00515 517 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 BACH1O14867 736 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 PQBP1O60828 265 aaKnown RBP24.77■■□□□ 1.56
CLN3-234ENST00000568472 TOB1P50616 345 aaPredicted RBP24.77■■□□□ 1.56
CLN3-234ENST00000568472 CHMP4BP1P59074 171 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 ZNF174Q15697 407 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 FAM47CQ5HY64 1035 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 FAM126BQ8IXS8 530 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 UNC45AQ9H3U1 944 aa24.77■■□□□ 1.56
CLN3-234ENST00000568472 CD4P01730 458 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 GNAT1P11488 350 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 MIER3Q7Z3K6 550 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 C7orf61Q8IZ16 206 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 ZNF302Q9NR11 478 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 PRKAG2Q9UGJ0 569 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 VAV3Q9UKW4 847 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 MTMR6Q9Y217 621 aa24.76■■□□□ 1.55
CLN3-234ENST00000568472 WNT7AO00755 349 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 CLTBP09497 229 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 SWSAP1Q6NVH7 229 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 TRIM50Q86XT4 487 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 GJA10Q969M2 543 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 PCYT2Q99447 389 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 GTF2IRD1Q9UHL9 959 aa24.75■■□□□ 1.55
CLN3-234ENST00000568472 MAFBQ9Y5Q3 323 aaPredicted RBP24.75■■□□□ 1.55
CLN3-234ENST00000568472 MKI67P46013 3256 aaKnown RBP24.74■■□□□ 1.55
CLN3-234ENST00000568472 CHMP2AO43633 222 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 BMP15O95972 392 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 OR52Z1P0C646 297 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 FAAP100Q0VG06 881 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 PDXDC2PQ6P474 469 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 TTC12Q9H892 705 aaPredicted RBP24.74■■□□□ 1.55
CLN3-234ENST00000568472 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.74■■□□□ 1.55
CLN3-234ENST00000568472 HDAC6Q9UBN7 1215 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 SCN10AQ9Y5Y9 1956 aa24.74■■□□□ 1.55
CLN3-234ENST00000568472 NRCAMQ92823 1304 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 DKC1O60832 514 aaKnown RBP eCLIP24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms