RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TRBV23-1A0A0A0MS06 115 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 GTF2F1P35269 517 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS35-207ENST00000568191 PPP2CBP62714 309 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 PPP2CAP67775 309 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 SMAD2Q15796 467 aaKnown RBP4.49□□□□□ -1.69
VPS35-207ENST00000568191 LONRF2Q1L5Z9 754 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 ZNF568Q3ZCX4 644 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 FAM47CQ5HY64 1035 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 CPZQ66K79 652 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 KCTD1Q719H9 257 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 KBTBD2Q8IY47 623 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 IFNL2Q8IZJ0 200 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 WDR48Q8TAF3 677 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 CLEC4DQ8WXI8 215 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 KISS1RQ969F8 398 aaPredicted RBP4.49□□□□□ -1.69
VPS35-207ENST00000568191 ARMC5Q96C12 935 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 CDIP1Q9H305 208 aa4.49□□□□□ -1.69
VPS35-207ENST00000568191 CKMP06732 381 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 INSRRP14616 1297 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 MLLT6P55198 1093 aaPredicted RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 GABREP78334 506 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 GUCY1A3Q02108 690 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 NFATC3Q12968 1075 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 CRY1Q16526 586 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 LRP10Q7Z4F1 713 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 CIR1Q86X95 450 aaPredicted RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 DTX3Q8N9I9 347 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 ZBTB38Q8NAP3 1195 aaPredicted RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 FBXW5Q969U6 566 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 CDK5RAP1Q96SZ6 601 aaKnown RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 PDGFDQ9GZP0 370 aaPredicted RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 IGSF5Q9NSI5 407 aa4.48□□□□□ -1.69
VPS35-207ENST00000568191 PPARGC1AQ9UBK2 798 aaKnown RBP4.48□□□□□ -1.69
VPS35-207ENST00000568191 BLACEA4D250 179 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 B4GALT4O60513 344 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 GJA4P35212 333 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 GLRBP48167 497 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 EPHA5P54756 1037 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 PFKPQ01813 784 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 GPR19Q15760 415 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 NTRK3Q16288 839 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 SKIDA1Q1XH10 827 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 HS1BP3Q53T59 392 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 BTBD8Q5XKL5 378 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 RALYLQ86SE5 291 aaKnown RBP4.47□□□□□ -1.69
VPS35-207ENST00000568191 IGDCC4Q8TDY8 1250 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 DVL3Q92997 716 aaPredicted RBP4.47□□□□□ -1.69
VPS35-207ENST00000568191 C8orf37Q96NL8 207 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 RBM15Q96T37 977 aaKnown RBP eCLIP4.47□□□□□ -1.69
VPS35-207ENST00000568191 DEF6Q9H4E7 631 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 IPPKQ9H8X2 491 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 ARHGAP28Q9P2N2 729 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 PFDN2Q9UHV9 154 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 MSRB2Q9Y3D2 182 aa4.47□□□□□ -1.69
VPS35-207ENST00000568191 H0Y858 1186 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 NKRFO15226 690 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS35-207ENST00000568191 B4GALT3O60512 393 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 EFCAB14O75071 495 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ADAM17P78536 824 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 NFKB2Q00653 900 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 PUM1Q14671 1186 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS35-207ENST00000568191 SF3A1Q15459 793 aaKnown RBP4.46□□□□□ -1.7
VPS35-207ENST00000568191 YOD1Q5VVQ6 348 aaPredicted RBP4.46□□□□□ -1.7
VPS35-207ENST00000568191 CD276Q5ZPR3 534 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 SLFN13Q68D06 897 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 PKN3Q6P5Z2 889 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ARHGAP36Q6ZRI8 547 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 Q6ZUG5 572 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 SPATC1Q76KD6 591 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 C16orf59Q7L2K0 433 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ZC3H7AQ8IWR0 971 aaKnown RBP4.46□□□□□ -1.7
VPS35-207ENST00000568191 REXO1L1PQ8IX06 675 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 RBM12BQ8IXT5 1001 aaKnown RBP4.46□□□□□ -1.7
VPS35-207ENST00000568191 C8orf49Q96NF6 230 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 DHRS4Q9BTZ2 278 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 RIC8BQ9NVN3 520 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ZFP69BQ9UJL9 534 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ADAM29Q9UKF5 820 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 ATP23Q9Y6H3 246 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 KDM2BQ8NHM5 1336 aa4.46□□□□□ -1.7
VPS35-207ENST00000568191 CCDC163A0A0D9SF12 145 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 ZNF839A8K0R7 811 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 CUTAO60888 179 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 EPHB4P54760 987 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 HABP4Q5JVS0 413 aaKnown RBP4.45□□□□□ -1.7
VPS35-207ENST00000568191 STPG3Q8N7X2 389 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 ZCCHC14Q8WYQ9 949 aaKnown RBP4.45□□□□□ -1.7
VPS35-207ENST00000568191 KRTAP9-3Q9BYQ3 159 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 SEMA4AQ9H3S1 761 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 SEC61A2Q9H9S3 476 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 TCAF1Q9Y4C2 921 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 TRAF6Q9Y4K3 522 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 PCDHA8Q9Y5H6 950 aa4.45□□□□□ -1.7
VPS35-207ENST00000568191 WNT9AO14904 365 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 ADCY3O60266 1144 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 KNG1P01042 644 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 LTFP02788 710 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 PTPN1P18031 435 aaKnown RBP4.44□□□□□ -1.7
VPS35-207ENST00000568191 KRT15P19012 456 aa4.44□□□□□ -1.7
VPS35-207ENST00000568191 DBPQ10586 325 aaPredicted RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms