RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 USP11P51784 963 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 SP4Q02446 784 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 NEDD9Q14511 834 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 MFSD10Q14728 455 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 DGKDQ16760 1214 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 Q4G0T1 1027 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 NFRKBQ6P4R8 1299 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 C16orf59Q7L2K0 433 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 CCDC60Q8IWA6 550 aaPredicted RBP11.21□□□□□ -0.61
CLN3-220ENST00000566040 DIS3L2Q8IYB7 885 aaKnown RBP11.21□□□□□ -0.61
CLN3-220ENST00000566040 FBXO18Q8NFZ0 1043 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 BICD2Q8TD16 824 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 HAS1Q92839 578 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 OSBPL7Q9BZF2 842 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 KCNMB3Q9NPA1 279 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 HDAC6Q9UBN7 1215 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 GTF2IRD1Q9UHL9 959 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 REV3LO60673 3130 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 ZBTB42B2RXF5 422 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 IPO5O00410 1097 aaKnown RBP11.2□□□□□ -0.62
CLN3-220ENST00000566040 MAFGO15525 162 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 KPNA6O60684 536 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 CYP2C9P11712 490 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 KRT2P35908 639 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 ACTR2P61160 394 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 SPIRE1Q08AE8 756 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 NONOQ15233 471 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLN3-220ENST00000566040 UGCGQ16739 394 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 KIAA0753Q2KHM9 967 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 TCTN1Q2MV58 587 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 PRR16Q569H4 304 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 MCTP2Q6DN12 878 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 MOXD1Q6UVY6 613 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 ABHD15Q6UXT9 468 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 CHRDL2Q6WN34 429 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 PIK3AP1Q6ZUJ8 805 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 KRT25Q7Z3Z0 450 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 POTEDQ86YR6 584 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 ZBTB10Q96DT7 871 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 CDHR1Q96JP9 859 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 RNPEPQ9H4A4 650 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 EHMT1Q9H9B1 1298 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 MLXIPQ9HAP2 919 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 JPH1Q9HDC5 661 aaPredicted RBP11.2□□□□□ -0.62
CLN3-220ENST00000566040 SLC9A2Q9UBY0 812 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 VAV3Q9UKW4 847 aa11.2□□□□□ -0.62
CLN3-220ENST00000566040 IGSF9BQ9UPX0 1349 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 H3BRB1 525 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 ST18O60284 1047 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 ZNF862O60290 1169 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 STBD1O95210 358 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 CYP2C18P33260 490 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 TOB1P50616 345 aaPredicted RBP11.19□□□□□ -0.62
CLN3-220ENST00000566040 MDM2Q00987 491 aaPredicted RBP11.19□□□□□ -0.62
CLN3-220ENST00000566040 RBL2Q08999 1139 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 MBTPS1Q14703 1052 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 MARCH8Q5T0T0 291 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 BADQ92934 168 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 UNC45AQ9H3U1 944 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 TUT1Q9H6E5 874 aaKnown RBP11.19□□□□□ -0.62
CLN3-220ENST00000566040 UPF2Q9HAU5 1272 aaKnown RBP11.19□□□□□ -0.62
CLN3-220ENST00000566040 NR2E3Q9Y5X4 410 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 ATG2AQ2TAZ0 1938 aa11.19□□□□□ -0.62
CLN3-220ENST00000566040 MROH7Q68CQ1 1323 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 DDX39AO00148 427 aaKnown RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 EML1O00423 815 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 SOX1O00570 391 aaPredicted RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 ZEB2O60315 1214 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 SUPT20HL2P0C7V6 817 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 SMIM10L2AP0DMW4 78 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 SMIM10L2BP0DMW5 78 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 U2AF2P26368 475 aaKnown RBP eCLIP11.18□□□□□ -0.62
CLN3-220ENST00000566040 GJB2P29033 226 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 BMP8BP34820 402 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 HMGN5P82970 282 aaKnown RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 SETQ01105 290 aaPredicted RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 PTPN11Q06124 597 aaPredicted RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 NBR1Q14596 966 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 C9orf50Q5SZB4 431 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 UTP14CQ5TAP6 766 aaKnown RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 PPP4R3AQ6IN85 833 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 NEK8Q86SG6 692 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 LMBR1Q8WVP7 490 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 WASF1Q92558 559 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 C8orf76Q96K31 380 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 TMEM60Q9H2L4 133 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 PRDM5Q9NQX1 630 aaPredicted RBP11.18□□□□□ -0.62
CLN3-220ENST00000566040 KIAA1671Q9BY89 1806 aa11.18□□□□□ -0.62
CLN3-220ENST00000566040 TIMP1P01033 207 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 PLCB4Q15147 1175 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 LETM2Q2VYF4 491 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 RUFY4Q6ZNE9 571 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 SERINC5Q86VE9 423 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 C4orf32Q8N8J7 132 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 GIMAP8Q8ND71 665 aaPredicted RBP11.17□□□□□ -0.62
CLN3-220ENST00000566040 IL27Q8NEV9 243 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 AFAP1L1Q8TED9 768 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 TRAPPC12Q8WVT3 735 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 SEPT1Q8WYJ6 367 aa11.17□□□□□ -0.62
CLN3-220ENST00000566040 SNX21Q969T3 373 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms