RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NEK1Q96PY6 1258 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 UHRF1Q96T88 793 aaPredicted RBP21.48■■□□□ 1.03
CLN3-218ENST00000565688 hCG_1642624A0A1W2PR95 340 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 LPXNO60711 386 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 ADAM17P78536 824 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 UBE2SQ16763 222 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 APOA5Q6Q788 366 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.47■■□□□ 1.03
CLN3-218ENST00000565688 LMBR1Q8WVP7 490 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 SEPT1Q8WYJ6 367 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 PCDHA6Q9UN73 950 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 PCDHA8Q9Y5H6 950 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 UBIAD1Q9Y5Z9 338 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 DOCK5Q9H7D0 1870 aa21.47■■□□□ 1.03
CLN3-218ENST00000565688 LINC01553A4QN01 128 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 ATP9AO75110 1047 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 CTSHP09668 335 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 TSGA10IPQ3SY00 556 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 KRT40Q6A162 431 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 FAM117BQ6P1L5 589 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 TAF2Q6P1X5 1199 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 DHX32Q7L7V1 743 aaKnown RBP21.46■■□□□ 1.03
CLN3-218ENST00000565688 SPRED2Q7Z698 418 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 MYOCDQ8IZQ8 938 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 APBB2Q92870 758 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 ERAP1Q9NZ08 941 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 TELO2Q9Y4R8 837 aa21.46■■□□□ 1.03
CLN3-218ENST00000565688 BMP1P13497 986 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 HTRA4P83105 476 aaPredicted RBP21.45■■□□□ 1.02
CLN3-218ENST00000565688 EXOSC10Q01780 885 aaKnown RBP21.45■■□□□ 1.02
CLN3-218ENST00000565688 TFF2Q03403 129 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 KRT32Q14532 448 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 FAM26DQ5JW98 314 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 PPP1R18Q6NYC8 613 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 RPAINQ86UA6 219 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 JADE2Q9NQC1 790 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 MTUS1Q9ULD2 1270 aa21.45■■□□□ 1.02
CLN3-218ENST00000565688 GSTTP1A0A1W2PQM5 241 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 hCG_1984214I3L0E3 225 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 ZBTB43O43298 467 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 NAPAP54920 295 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 RTN1Q16799 776 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 WWC2Q6AWC2 1192 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 RSPH3Q86UC2 560 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 ZNF713Q8N859 430 aaPredicted RBP21.44■■□□□ 1.02
CLN3-218ENST00000565688 GDPD5Q8WTR4 605 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 GLG1Q92896 1179 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 HLA-CQ95604 372 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 SMARCAD1Q9H4L7 1026 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 SUGCTQ9HAC7 445 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 RIC8AQ9NPQ8 531 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 CNTNAP5Q8WYK1 1306 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 MICAL3Q7RTP6 2002 aa21.44■■□□□ 1.02
CLN3-218ENST00000565688 COL4A4P53420 1690 aaPredicted RBP21.44■■□□□ 1.02
CLN3-218ENST00000565688 CDC45O75419 566 aa21.43■■□□□ 1.02
CLN3-218ENST00000565688 FOSP01100 380 aaPredicted RBP21.43■■□□□ 1.02
CLN3-218ENST00000565688 HMGB1P09429 215 aaKnown RBP21.43■■□□□ 1.02
CLN3-218ENST00000565688 PPFIA1Q13136 1202 aa21.43■■□□□ 1.02
CLN3-218ENST00000565688 SP7Q8TDD2 431 aaPredicted RBP21.43■■□□□ 1.02
CLN3-218ENST00000565688 TOP1MTQ969P6 601 aa21.43■■□□□ 1.02
CLN3-218ENST00000565688 IFIH1Q9BYX4 1025 aaKnown RBP21.43■■□□□ 1.02
CLN3-218ENST00000565688 GLT8D2Q9H1C3 349 aa21.43■■□□□ 1.02
CLN3-218ENST00000565688 RPLP2P05387 115 aaKnown RBP21.42■■□□□ 1.02
CLN3-218ENST00000565688 RCAN1P53805 252 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 FBXO22Q8NEZ5 403 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 SAMD11Q96NU1 681 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 YME1L1Q96TA2 773 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 JPH1Q9HDC5 661 aaPredicted RBP21.42■■□□□ 1.02
CLN3-218ENST00000565688 PKD2L1Q9P0L9 805 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 TUBE1Q9UJT0 475 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 BRPF3Q9ULD4 1205 aa21.42■■□□□ 1.02
CLN3-218ENST00000565688 MARK3P27448 753 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 KCNQ1P51787 676 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 ADCY7P51828 1080 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 FUT2Q10981 343 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 GRIK4Q16099 956 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 RASEFQ8IZ41 740 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 TNPO1Q92973 898 aaKnown RBP21.41■■□□□ 1.02
CLN3-218ENST00000565688 MXRA8Q9BRK3 442 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 AZI2Q9H6S1 392 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 KCNH7Q9NS40 1196 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 SLC9A2Q9UBY0 812 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 V9GY48 417 aaPredicted RBP21.41■■□□□ 1.02
CLN3-218ENST00000565688 KAT6AQ92794 2004 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 SIP14410 1827 aa21.41■■□□□ 1.02
CLN3-218ENST00000565688 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.4■■□□□ 1.02
CLN3-218ENST00000565688 MBLAC1A4D2B0 266 aaPredicted RBP21.4■■□□□ 1.02
CLN3-218ENST00000565688 GOLGA8AA7E2F4 631 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 GOLGA8BA8MQT2 603 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 CHRNA1P02708 482 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 ADCK5Q3MIX3 580 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 RUFY4Q6ZNE9 571 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 TCEANC2Q96MN5 208 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 SDF4Q9BRK5 362 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 C17orf80Q9BSJ5 609 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 OSBPL7Q9BZF2 842 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 BARHL2Q9NY43 387 aa21.4■■□□□ 1.02
CLN3-218ENST00000565688 NFASCO94856 1347 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 KLF18A0A0U1RQI7 1052 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 RRN3P2A6NIE6 340 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms