RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZMYND12Q9H0C1 365 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 KCNH7Q9NS40 1196 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 SETD4Q9NVD3 440 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 TMEM260Q9NX78 707 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 PPP4R2Q9NY27 417 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 MSRAQ9UJ68 235 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 PTPRSQ13332 1948 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 ARHGEF15O94989 841 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 ARP10275 920 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 FOSL2P15408 326 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 TCF7P36402 384 aaPredicted RBP17.02■□□□□ 0.32
CLN3-213ENST00000565047 AP3B2Q13367 1082 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 CNKSR3Q6P9H4 555 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 HERC6Q8IVU3 1022 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 SEPT1Q8WYJ6 367 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 ATP6V0A1Q93050 837 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 SLC9A7Q96T83 725 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 TM6SF1Q9BZW5 370 aa17.02■□□□□ 0.32
CLN3-213ENST00000565047 FTOQ9C0B1 505 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-213ENST00000565047 EDIL3O43854 480 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 LGR5O75473 907 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 IFNAR1P17181 557 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 WDR5P61964 334 aaKnown RBP17.01■□□□□ 0.31
CLN3-213ENST00000565047 SP4Q02446 784 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 ITGB3BPQ13352 177 aaPredicted RBP17.01■□□□□ 0.31
CLN3-213ENST00000565047 CEP55Q53EZ4 464 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 UTP14CQ5TAP6 766 aaKnown RBP17.01■□□□□ 0.31
CLN3-213ENST00000565047 LMBR1Q8WVP7 490 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 PHKBQ93100 1093 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 GLT8D2Q9H1C3 349 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 PRDM12Q9H4Q4 367 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 SLC28A3Q9HAS3 691 aa17.01■□□□□ 0.31
CLN3-213ENST00000565047 NFASCO94856 1347 aa17■□□□□ 0.31
CLN3-213ENST00000565047 IGLV3-22A0A075B6J6 115 aa17■□□□□ 0.31
CLN3-213ENST00000565047 FAM86B1E9PN63 330 aa17■□□□□ 0.31
CLN3-213ENST00000565047 CAND2O75155 1236 aa17■□□□□ 0.31
CLN3-213ENST00000565047 ATG7O95352 703 aa17■□□□□ 0.31
CLN3-213ENST00000565047 CYP3A4P08684 503 aa17■□□□□ 0.31
CLN3-213ENST00000565047 FAM86B2P0C5J1 330 aa17■□□□□ 0.31
CLN3-213ENST00000565047 FGD1P98174 961 aa17■□□□□ 0.31
CLN3-213ENST00000565047 FAM26DQ5JW98 314 aa17■□□□□ 0.31
CLN3-213ENST00000565047 MARCH8Q5T0T0 291 aa17■□□□□ 0.31
CLN3-213ENST00000565047 NIPA1Q7RTP0 329 aa17■□□□□ 0.31
CLN3-213ENST00000565047 RPAINQ86UA6 219 aa17■□□□□ 0.31
CLN3-213ENST00000565047 USP38Q8NB14 1042 aa17■□□□□ 0.31
CLN3-213ENST00000565047 AGO4Q9HCK5 861 aaKnown RBP17■□□□□ 0.31
CLN3-213ENST00000565047 ZNF215Q9UL58 517 aaPredicted RBP17■□□□□ 0.31
CLN3-213ENST00000565047 EMSYQ7Z589 1322 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 NRCAMQ92823 1304 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 ABHD14A-ACY1A0A1B0GW23 586 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 MBLAC1A4D2B0 266 aaPredicted RBP16.99■□□□□ 0.31
CLN3-213ENST00000565047 RSPH10B2B2RC85 870 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 NEFLP07196 543 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 CA3P07451 260 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 RSPH10BP0C881 870 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 THPOP40225 353 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 DEFB103AP81534 67 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 ARHGAP4P98171 946 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 PLEKHG4Q58EX7 1191 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLN3-213ENST00000565047 RNF26Q9BY78 433 aaPredicted RBP16.99■□□□□ 0.31
CLN3-213ENST00000565047 EHMT1Q9H9B1 1298 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 NCOA5Q9HCD5 579 aaKnown RBP16.99■□□□□ 0.31
CLN3-213ENST00000565047 PKD2L1Q9P0L9 805 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 NAP1L2Q9ULW6 460 aaPredicted RBP16.99■□□□□ 0.31
CLN3-213ENST00000565047 REV3LO60673 3130 aa16.99■□□□□ 0.31
CLN3-213ENST00000565047 XIRP2A4UGR9 3374 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 IGKV6D-21A0A0A0MT36 114 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 DHX15O43143 795 aaKnown RBP16.98■□□□□ 0.31
CLN3-213ENST00000565047 GNAT1P11488 350 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 CCT2P78371 535 aaKnown RBP16.98■□□□□ 0.31
CLN3-213ENST00000565047 JAKMIP3Q5VZ66 844 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 TMCO2Q7Z6W1 182 aaPredicted RBP16.98■□□□□ 0.31
CLN3-213ENST00000565047 ZNF274Q96GC6 653 aaPredicted RBP16.98■□□□□ 0.31
CLN3-213ENST00000565047 JPH1Q9HDC5 661 aaPredicted RBP16.98■□□□□ 0.31
CLN3-213ENST00000565047 ERAP1Q9NZ08 941 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 SLC9A2Q9UBY0 812 aa16.98■□□□□ 0.31
CLN3-213ENST00000565047 TRANK1O15050 2925 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 EPOPA6NHQ4 379 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 PPFIA3O75145 1194 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 CCNE2O96020 404 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 ACTR2P61160 394 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 TAP1Q03518 808 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 MGAT3Q09327 533 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 PPP2R2DQ66LE6 453 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 RUFY4Q6ZNE9 571 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 DBF4BQ8NFT6 615 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 IL17RAQ96F46 866 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 UPF3BQ9BZI7 483 aaKnown RBP16.97■□□□□ 0.31
CLN3-213ENST00000565047 SMARCAD1Q9H4L7 1026 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 CYP46A1Q9Y6A2 500 aa16.97■□□□□ 0.31
CLN3-213ENST00000565047 GJB5O95377 273 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 CHRNA1P02708 482 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 POU3F3P20264 500 aaPredicted RBP16.96■□□□□ 0.31
CLN3-213ENST00000565047 CIITAP33076 1130 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 IKBKEQ14164 716 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 ABHD15Q6UXT9 468 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-213ENST00000565047 PLPPR4Q7Z2D5 763 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 SPRED2Q7Z698 418 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms