RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SPATA20Q8TB22 786 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 LARP4BQ92615 738 aaKnown RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 RAD54LQ92698 747 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SMARCE1Q969G3 411 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 MAP7D2Q96T17 732 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 BLZF1Q9H2G9 400 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 TUFT1Q9NNX1 390 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 RGL1Q9NZL6 768 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 NFASCO94856 1347 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 POTEFA5A3E0 1075 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 ESPNB1AK53 854 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 BIN1O00499 593 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 MYL1P05976 194 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 AMPD3Q01432 767 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 CYP4A11Q02928 519 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 CUL4BQ13620 913 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 STX1AQ16623 288 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 SV2BQ7L1I2 683 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 EEPD1Q7L9B9 569 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 KCTD17Q8N5Z5 321 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 DYDC2Q96IM9 177 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 SENP7Q9BQF6 1050 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 RBSNQ9H1K0 784 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 ANO10Q9NW15 660 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 TCEAL9Q9UHQ7 104 aa12.56□□□□□ -0.4
USP3-218ENST00000560202 DIS3Q9Y2L1 958 aaKnown RBP12.56□□□□□ -0.4
USP3-218ENST00000560202 A0A087WWV3 80 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 E9PMD0 336 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 ECM2O94769 699 aaPredicted RBP12.55□□□□□ -0.4
USP3-218ENST00000560202 CCNE2O96020 404 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 TGFB3P10600 412 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 MUTP22033 750 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 SFNP31947 248 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 JAK3P52333 1124 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 NLRP12P59046 1061 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 SP2Q02086 613 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 CTTNQ14247 550 aaKnown RBP12.55□□□□□ -0.4
USP3-218ENST00000560202 DHX8Q14562 1220 aaKnown RBP12.55□□□□□ -0.4
USP3-218ENST00000560202 MCM6Q14566 821 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 ANO6Q4KMQ2 910 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 MORN1Q5T089 497 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 ZNF746Q6NUN9 644 aaPredicted RBP12.55□□□□□ -0.4
USP3-218ENST00000560202 ARMCX2Q7L311 632 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 TPH2Q8IWU9 490 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 NEK9Q8TD19 979 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 GSDMAQ96QA5 445 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 BCAS3Q9H6U6 928 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 MAN1B1Q9UKM7 699 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 DNM3Q9UQ16 869 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 SAMM50Q9Y512 469 aa12.55□□□□□ -0.4
USP3-218ENST00000560202 WDR64B1ANS9 1081 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 P4HBP07237 508 aaKnown RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 ISM2Q6H9L7 571 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 KCNV1Q6PIU1 500 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 TRIML1Q8N9V2 468 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 RDM1Q8NG50 284 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 MAML3Q96JK9 1138 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 C7orf25Q9BPX7 421 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 TRIM9Q9C026 710 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 LRRC27Q9C0I9 530 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 JPH1Q9HDC5 661 aaPredicted RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 SLC5A4Q9NY91 659 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 SLC9A2Q9UBY0 812 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 PLA2G4BP0C869 781 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 UBA1P22314 1058 aaKnown RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 PSMC6P62333 389 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 MAP2K5Q13163 448 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 MORC3Q14149 939 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 NEDD9Q14511 834 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 DPCR1Q3MIW9 517 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 MAMDC4Q6UXC1 1216 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 CYFIP1Q7L576 1253 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 FBXO16Q8IX29 292 aaPredicted RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 SMAP1Q8IYB5 467 aaPredicted RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 RNF214Q8ND24 703 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 GIMAP8Q8ND71 665 aaPredicted RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 BANK1Q8NDB2 785 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 NPLOC4Q8TAT6 608 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 TRIM44Q96DX7 344 aaPredicted RBP12.54□□□□□ -0.4
USP3-218ENST00000560202 LXNQ9BS40 222 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 DNAJC25Q9H1X3 360 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 GRPEL1Q9HAV7 217 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 PCDHA10Q9Y5I2 948 aa12.54□□□□□ -0.4
USP3-218ENST00000560202 PLXNB2O15031 1838 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 MYMKA6NI61 221 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 TNPO2O14787 897 aaKnown RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 SORBS3O60504 671 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 CAVIN2O95810 425 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 RPN1P04843 607 aaKnown RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 SSBP05455 408 aaKnown RBP eCLIP12.53□□□□□ -0.4
USP3-218ENST00000560202 MAP2K2P36507 400 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 QARSP47897 775 aaKnown RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 VEGFBP49765 207 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 C11orf57Q6ZUT1 292 aaPredicted RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 NACC1Q96RE7 527 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 ZSWIM4Q9H7M6 989 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 RMND1Q9NWS8 449 aa12.53□□□□□ -0.4
USP3-218ENST00000560202 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 WRAP73Q9P2S5 460 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms