RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NSUN4Q96CB9 384 aaKnown RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 STRBPQ96SI9 672 aaKnown RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 MTA3Q9BTC8 594 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 PBX4Q9BYU1 374 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 KRT23Q9C075 422 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 ZCCHC2Q9C0B9 1178 aaKnown RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 PUS7LQ9H0K6 701 aaKnown RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 CNNM2Q9H8M5 875 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 GMIPQ9P107 970 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 HDAC9Q9UKV0 1011 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 DYRK1BQ9Y463 629 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 SNX14Q9Y5W7 946 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 TACC3Q9Y6A5 838 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 IRS2Q9Y4H2 1338 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 CEP290O15078 2479 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 HTTP42858 3142 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 DLEC1Q9Y238 1755 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 TTC24A2A3L6 582 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 PPIP5K2O43314 1243 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 SH3BP5O60239 455 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 BRINP1O60477 761 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 SCGB1D2O95969 90 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 FGAP02671 866 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 NFKB1P19838 968 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 MECOMQ03112 1051 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 SART3Q15020 963 aaKnown RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 TNIP1Q15025 636 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 BBS9Q3SYG4 887 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 CCDC178Q5BJE1 867 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 MFSD14BQ5SR56 506 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 AXDND1Q5T1B0 1012 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 SPRYD7Q5W111 196 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 PPP4R4Q6NUP7 873 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 HHIPL2Q6UWX4 724 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 RUFY3Q7L099 469 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 DHX32Q7L7V1 743 aaKnown RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 RALYLQ86SE5 291 aaKnown RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 ZNF589Q86UQ0 364 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 IFNL3Q8IZI9 196 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 NCOA7Q8NI08 942 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 KISS1RQ969F8 398 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 JAKMIP1Q96N16 626 aaKnown RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 CDC6Q99741 560 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 DHRS4Q9BTZ2 278 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 CBX8Q9HC52 389 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 SH2B1Q9NRF2 756 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 PDRG1Q9NUG6 133 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 ZFATQ9P243 1243 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 LIMCH1Q9UPQ0 1083 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 POLR3KQ9Y2Y1 108 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.94□□□□□ -1.46
LDLR-209ENST00000558528 SLC4A4Q9Y6R1 1079 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 WDR19Q8NEZ3 1342 aa5.94□□□□□ -1.46
LDLR-209ENST00000558528 LAMB2P55268 1798 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 LAMA3Q16787 3333 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 SPEF2Q9C093 1822 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 GPR75-ASB3A0A0A6YYF3 556 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 TRAV20A0A0B4J274 112 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 ERICH2A1L162 156 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 METTL12A8MUP2 240 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 M0R2C6 588 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 ATXN7O15265 892 aaPredicted RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 SMNDC1O75940 238 aaKnown RBP eCLIP5.93□□□□□ -1.46
LDLR-209ENST00000558528 MBD4O95243 580 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 CYP21A2P08686 494 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 CASTP20810 708 aaKnown RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 MCM5P33992 734 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 TDO2P48775 406 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 GPLD1P80108 840 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 PDE4BQ07343 736 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 PCDH1Q08174 1060 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 AP3B2Q13367 1082 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 C21orf62-AS1Q17RA5 79 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 SBK1Q52WX2 424 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 NXNQ6DKJ4 435 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 SYNE3Q6ZMZ3 975 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 RUFY4Q6ZNE9 571 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 MFSD6Q6ZSS7 791 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 ZNF598Q86UK7 904 aaKnown RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 LRRTM3Q86VH5 581 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 TXNRD3Q86VQ6 643 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 PASD1Q8IV76 773 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 RAVER1Q8IY67 606 aaKnown RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 FBXL16Q8N461 479 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 TEKT1Q969V4 418 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 INTS4Q96HW7 963 aaKnown RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 TMEM87BQ96K49 555 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 SEC62Q99442 399 aaKnown RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 FAM126AQ9BYI3 521 aaPredicted RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 ASPSCR1Q9BZE9 553 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 TAOK3Q9H2K8 898 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 ARPP21Q9UBL0 812 aaPredicted RBP5.93□□□□□ -1.46
LDLR-209ENST00000558528 KIF3AQ9Y496 699 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 PCDHGC4Q9Y5F7 938 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 LTBP3Q9NS15 1303 aa5.93□□□□□ -1.46
LDLR-209ENST00000558528 DDX60Q8IY21 1712 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 SHTN1A0MZ66 631 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 E7EWF7 191 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 IFRD1O00458 451 aaPredicted RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 TNFRSF10CO14798 259 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms