RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MRIQ9BWK5 157 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 KRT23Q9C075 422 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 PPANQ9NQ55 473 aaKnown RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 DDX4Q9NQI0 724 aaKnown RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 RMND1Q9NWS8 449 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 TAB2Q9NYJ8 693 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 ROBO3Q96MS0 1386 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 TTC36A6NLP5 189 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 GRIN1Q05586 938 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 SSRP1Q08945 709 aaKnown RBP11.95□□□□□ -0.5
USP3-206ENST00000558157 SPA17Q15506 151 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 KIAA0753Q2KHM9 967 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 AGBL2Q5U5Z8 902 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 ARHGAP27Q6ZUM4 889 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 MFN1Q8IWA4 741 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 FERMT2Q96AC1 680 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 CSRNP2Q9H175 543 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 NHEJ1Q9H9Q4 299 aaPredicted RBP11.95□□□□□ -0.5
USP3-206ENST00000558157 NID2Q14112 1375 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 SBF1O95248 1867 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 EME2A4GXA9 379 aaPredicted RBP11.95□□□□□ -0.5
USP3-206ENST00000558157 PRDM1O75626 825 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 FMNL1O95466 1100 aaPredicted RBP11.95□□□□□ -0.5
USP3-206ENST00000558157 ALADP13716 330 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 DNM2P50570 870 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 ZBED6P86452 979 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 SLC7A5Q01650 507 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 LMNB2Q03252 620 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 MYO1EQ12965 1108 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 CFAP221Q4G0U5 840 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 SGMS1Q86VZ5 419 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 ZNF507Q8TCN5 953 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 DYNLL2Q96FJ2 89 aa11.95□□□□□ -0.5
USP3-206ENST00000558157 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP3-206ENST00000558157 GOLGA6L10A0A0M3HER8 536 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 A0A1W2PQJ5 194 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ZBTB43O43298 467 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ANP32DO95626 131 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 YBX3P16989 372 aaKnown RBP eCLIP11.94□□□□□ -0.53e-6■■■□□ 16.3
USP3-206ENST00000558157 CACNB3P54284 484 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 NFIAQ12857 509 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ACCSLQ4AC99 568 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 FIGNQ5HY92 759 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 FAM43BQ6ZT52 329 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 DIS3L2Q8IYB7 885 aaKnown RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 ANKS4BQ8N8V4 417 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 AGBL3Q8NEM8 1001 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 CENPTQ96BT3 561 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 TAF1DQ9H5J8 278 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 SH2D4AQ9H788 454 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 CNOT10Q9H9A5 744 aaKnown RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 SENP2Q9HC62 589 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ZSWIM5Q9P217 1185 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 BAIAP2L1Q9UHR4 511 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 HDAC9Q9UKV0 1011 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 GRID2IPA4D2P6 1211 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 RCCD1A6NED2 376 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ABLIM1O14639 778 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 SKAP2O75563 359 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 FGRP09769 529 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 FERP16591 822 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 IFNAR1P17181 557 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 IBSPP21815 317 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 RAB27AP51159 221 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 BLMHQ13867 455 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ZNF268Q14587 947 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 HIBCHQ6NVY1 386 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 TEX9Q8N6V9 391 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 CCDC63Q8NA47 563 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 DRAXINQ8NBI3 349 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 SPDYE1Q8NFV5 336 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 PARD3BQ8TEW8 1205 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 NOC3LQ8WTT2 800 aaKnown RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 STAMBPL1Q96FJ0 436 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 L3MBTL3Q96JM7 780 aaPredicted RBP11.94□□□□□ -0.5
USP3-206ENST00000558157 TTYH3Q9C0H2 523 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 SLC12A4Q9UP95 1085 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 ZNF541Q9H0D2 1346 aa11.94□□□□□ -0.5
USP3-206ENST00000558157 SIPA1L1O43166 1804 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 MACROD2A1Z1Q3 448 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 CCT8L1PA6NM43 557 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 BTBD18B2RXH4 712 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 FZD9O00144 591 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 CCND1P24385 295 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 AFMP43652 599 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 CCNG1P51959 295 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 BYSLQ13895 437 aaKnown RBP11.93□□□□□ -0.5
USP3-206ENST00000558157 ITIH4Q14624 930 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 SEPT2Q15019 361 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 TNIP1Q15025 636 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 PPP1R7Q15435 360 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 SPRED3Q2MJR0 410 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 ZNF658Q5TYW1 1059 aaPredicted RBP11.93□□□□□ -0.5
USP3-206ENST00000558157 SLC30A9Q6PML9 568 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 CACNA2D4Q7Z3S7 1137 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 ESR2Q92731 530 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 PHKBQ93100 1093 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 LRRC45Q96CN5 670 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 ZKSCAN3Q9BRR0 538 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 THAP9Q9H5L6 903 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms