RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PHF20Q9BVI0 1012 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 RBPJLQ9UBG7 517 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 SLC4A7Q9Y6M7 1214 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 H0Y858 1186 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 CNOT4O95628 575 aaKnown RBP4.47□□□□□ -1.69
VPS13C-205ENST00000558088 KNG1P01042 644 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 COL6A1P12109 1028 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 FAHP16930 419 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 GRK2P25098 689 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 GRK3P35626 688 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 RAC3P60763 192 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 PPP2R2AP63151 447 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 USP10Q14694 798 aaKnown RBP4.47□□□□□ -1.69
VPS13C-205ENST00000558088 KIZQ2M2Z5 673 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 SLC10A6Q3KNW5 377 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 PAN2Q504Q3 1202 aaKnown RBP4.47□□□□□ -1.69
VPS13C-205ENST00000558088 PHF19Q5T6S3 580 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 OTOP3Q7RTS5 596 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 GPR155Q7Z3F1 870 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 AJUBAQ96IF1 538 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 WWC2-AS2Q96NR7 200 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 GNRHR2Q96P88 292 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 ADOQ96SZ5 270 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.47□□□□□ -1.69
VPS13C-205ENST00000558088 PCED1AQ9H1Q7 454 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 WASF3Q9UPY6 502 aa4.47□□□□□ -1.69
VPS13C-205ENST00000558088 IQCA1LA6NCM1 817 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 CSF2RBP32927 897 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 TGFB2P61812 414 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 HSP90AA2PQ14568 343 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-205ENST00000558088 NRN1LQ496H8 165 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 CRB2Q5IJ48 1285 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 MRM1Q6IN84 353 aaKnown RBP4.46□□□□□ -1.7
VPS13C-205ENST00000558088 TCTN3Q6NUS6 607 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 DPH6Q7L8W6 267 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-205ENST00000558088 PROSER1Q86XN7 944 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 STPG3Q8N7X2 389 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 UHMK1Q8TAS1 419 aaKnown RBP4.46□□□□□ -1.7
VPS13C-205ENST00000558088 DCAF4Q8WV16 495 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 CLEC4DQ8WXI8 215 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 KCNJ15Q99712 375 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 CSRNP2Q9H175 543 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 DSEQ9UL01 958 aa4.46□□□□□ -1.7
VPS13C-205ENST00000558088 ZFR2Q9UPR6 939 aaKnown RBP4.46□□□□□ -1.7
VPS13C-205ENST00000558088 CUTAO60888 179 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 GJB6O95452 261 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 COMTP21964 271 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 PFKPQ01813 784 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 ABHD18Q0P651 414 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 KLF10Q13118 480 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 FHL2Q14192 279 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 CD276Q5ZPR3 534 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 DPP8Q6V1X1 898 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-205ENST00000558088 RNF207Q6ZRF8 634 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 TAX1BP1Q86VP1 789 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 NEIL1Q96FI4 390 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-205ENST00000558088 ZFYVE21Q9BQ24 234 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 ALG1Q9BT22 464 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 CARD11Q9BXL7 1154 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 CDIP1Q9H305 208 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 KCND1Q9NSA2 647 aa4.45□□□□□ -1.7
VPS13C-205ENST00000558088 A0A1W2PQU0 124 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 ZNF839A8K0R7 811 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 FAM47E-STBD1D6RA91 191 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 NPIPB8E9PQR5 432 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 FOXS1O43638 330 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 COL6A2P12110 1019 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 ETFBP38117 255 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 GRIA2P42262 883 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 FOXE3Q13461 319 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 ZMAT1Q5H9K5 638 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 LBX2Q6XYB7 198 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 EP400NLQ6ZTU2 488 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 RBM12BQ8IXT5 1001 aaKnown RBP4.44□□□□□ -1.7
VPS13C-205ENST00000558088 MICAL1Q8TDZ2 1067 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 FAM89AQ96GI7 184 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 SGSM3Q96HU1 749 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 TACO1Q9BSH4 297 aaKnown RBP4.44□□□□□ -1.7
VPS13C-205ENST00000558088 KATNBL1Q9H079 304 aa4.44□□□□□ -1.7
VPS13C-205ENST00000558088 PPARGC1AQ9UBK2 798 aaKnown RBP4.44□□□□□ -1.7
VPS13C-205ENST00000558088 WDR33Q9C0J8 1336 aaKnown RBP4.44□□□□□ -1.7
VPS13C-205ENST00000558088 DLX3O60479 287 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 MSCO60682 206 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 ZNF202O95125 648 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 LTFP02788 710 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 ERCC5P28715 1186 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-205ENST00000558088 GPR85P60893 370 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 KCTD1Q719H9 257 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 IFNL3Q8IZI9 196 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS13C-205ENST00000558088 EDAQ92838 391 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 AARSD1Q9BTE6 412 aaKnown RBP4.43□□□□□ -1.7
VPS13C-205ENST00000558088 PDGFDQ9GZP0 370 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-205ENST00000558088 ARHGAP28Q9P2N2 729 aa4.43□□□□□ -1.7
VPS13C-205ENST00000558088 ING1Q9UK53 422 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-205ENST00000558088 PRODHO43272 600 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 RAD17O75943 681 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 SOD2P04179 222 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 CR2P20023 1033 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms