RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 UBIAD1Q9Y5Z9 338 aa16.77■□□□□ 0.28
SHMT2-235ENST00000557740 VCANP13611 3396 aa16.77■□□□□ 0.27
SHMT2-235ENST00000557740 NRCAMQ92823 1304 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 hCG_1984214I3L0E3 225 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 POU3F3P20264 500 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-235ENST00000557740 ADCY7P51828 1080 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 FGD1P98174 961 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 EXOSC10Q01780 885 aaKnown RBP16.76■□□□□ 0.27
SHMT2-235ENST00000557740 GRB10Q13322 594 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 SPRED2Q7Z698 418 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 RASEFQ8IZ41 740 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 MYOCDQ8IZQ8 938 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 ZNF713Q8N859 430 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-235ENST00000557740 TGS1Q96RS0 853 aaKnown RBP16.76■□□□□ 0.27
SHMT2-235ENST00000557740 MTUS1Q9ULD2 1270 aa16.76■□□□□ 0.27
SHMT2-235ENST00000557740 KLF18A0A0U1RQI7 1052 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 MAFGO15525 162 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 ATP9AO75110 1047 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 HMGB1P09429 215 aaKnown RBP16.75■□□□□ 0.27
SHMT2-235ENST00000557740 PPFIA1Q13136 1202 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 AAK1Q2M2I8 961 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 ADCK5Q3MIX3 580 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 TSGA10IPQ3SY00 556 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 PLEKHG4Q58EX7 1191 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 KRT40Q6A162 431 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 TEX2Q8IWB9 1127 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 ADAMTS19Q8TE59 1207 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 GDPD5Q8WTR4 605 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 SEPT1Q8WYJ6 367 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 GLG1Q92896 1179 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 JPH1Q9HDC5 661 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-235ENST00000557740 RIC8AQ9NPQ8 531 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 JADE2Q9NQC1 790 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 ERAP1Q9NZ08 941 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 BRPF3Q9ULD4 1205 aa16.75■□□□□ 0.27
SHMT2-235ENST00000557740 PRRC2BQ5JSZ5 2229 aaKnown RBP16.75■□□□□ 0.27
SHMT2-235ENST00000557740 LINC01553A4QN01 128 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 TNFRSF10AO00220 468 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 MARK3P27448 753 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 RCAN1P53805 252 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 TAF2Q6P1X5 1199 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.74■□□□□ 0.274e-7■□□□□ 9.3
SHMT2-235ENST00000557740 ANO3Q9BYT9 981 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 SMARCAD1Q9H4L7 1026 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 INSL6Q9Y581 213 aa16.74■□□□□ 0.27
SHMT2-235ENST00000557740 V9GY48 417 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-235ENST00000557740 RBAK-RBAKDNI3L0D1 243 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 FOSP01100 380 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-235ENST00000557740 ADAM17P78536 824 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 FUT2Q10981 343 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 GRIK4Q16099 956 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 RSPH3Q86UC2 560 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 APBB2Q92870 758 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 PGBD1Q96JS3 809 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 MXRA8Q9BRK3 442 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 SDF4Q9BRK5 362 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 GLT8D2Q9H1C3 349 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 AZI2Q9H6S1 392 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 KCNH7Q9NS40 1196 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 BARHL2Q9NY43 387 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 SLC9A2Q9UBY0 812 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 TUBE1Q9UJT0 475 aa16.73■□□□□ 0.27
SHMT2-235ENST00000557740 GSTTP1A0A1W2PQM5 241 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 STXBP3O00186 592 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 LPXNO60711 386 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 METAP2P50579 478 aaKnown RBP eCLIP16.72■□□□□ 0.272e-6■■■■□ 21
SHMT2-235ENST00000557740 ERVK-21P61565 698 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 TFF2Q03403 129 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 AP3B2Q13367 1082 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 MKRN4PQ13434 485 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-235ENST00000557740 FAM26DQ5JW98 314 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 TYW1BQ6NUM6 668 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 RUFY4Q6ZNE9 571 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 UHRF1Q96T88 793 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-235ENST00000557740 YME1L1Q96TA2 773 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 IFIH1Q9BYX4 1025 aaKnown RBP16.72■□□□□ 0.27
SHMT2-235ENST00000557740 COG5Q9UP83 839 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 PTPRSQ13332 1948 aa16.72■□□□□ 0.27
SHMT2-235ENST00000557740 DOCK5Q9H7D0 1870 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 CCDC196A0A1B0GTZ2 297 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 SMCO2A6NFE2 343 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 IGBP1P78318 339 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 CEP55Q53EZ4 464 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 FBXO22Q8NEZ5 403 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 CCDC136Q96JN2 1154 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 JAKMIP1Q96N16 626 aaKnown RBP16.71■□□□□ 0.27
SHMT2-235ENST00000557740 LMCD1Q9NZU5 365 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 TRPC6Q9Y210 931 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 SPTBN5Q9NRC6 3674 aaKnown RBP16.71■□□□□ 0.27
SHMT2-235ENST00000557740 TRANK1O15050 2925 aa16.71■□□□□ 0.27
SHMT2-235ENST00000557740 NFASCO94856 1347 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 COL4A4P53420 1690 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-235ENST00000557740 UPP2O95045 317 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 GHRP10912 638 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 CDC27P30260 824 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 ZNF76P36508 570 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 SREBF1P36956 1147 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 HTRA4P83105 476 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-235ENST00000557740 RPAINQ86UA6 219 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 TNPO1Q92973 898 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms