RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 DHX15O43143 795 aaKnown RBP12.12□□□□□ -0.47
LINC00239-201ENST00000556973 ACTR2P61160 394 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 SAFBQ15424 915 aaKnown RBP eCLIP12.12□□□□□ -0.47
LINC00239-201ENST00000556973 PTGISQ16647 500 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 INF2Q27J81 1249 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 PPP4R3AQ6IN85 833 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 GDF6Q6KF10 455 aaPredicted RBP12.12□□□□□ -0.47
LINC00239-201ENST00000556973 MFSD5Q6N075 450 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 PIK3AP1Q6ZUJ8 805 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 NEK8Q86SG6 692 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 TMEM199Q8N511 208 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 OXER1Q8TDS5 423 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 PPP1R13LQ8WUF5 828 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 TNPO1Q92973 898 aaKnown RBP12.12□□□□□ -0.47
LINC00239-201ENST00000556973 HIPK3Q9H422 1215 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 ERAP1Q9NZ08 941 aa12.12□□□□□ -0.47
LINC00239-201ENST00000556973 BTBD18B2RXH4 712 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 LGR5O75473 907 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 CD2BP2O95400 341 aaKnown RBP12.11□□□□□ -0.47
LINC00239-201ENST00000556973 GNAT1P11488 350 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 KRT76Q01546 638 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 LETM2Q2VYF4 491 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 ZNF746Q6NUN9 644 aaPredicted RBP12.11□□□□□ -0.47
LINC00239-201ENST00000556973 ABHD15Q6UXT9 468 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 PLPPR4Q7Z2D5 763 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 DIS3L2Q8IYB7 885 aaKnown RBP12.11□□□□□ -0.47
LINC00239-201ENST00000556973 GLG1Q92896 1179 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 TNFRSF25Q93038 417 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 LENG9Q96B70 501 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 C8orf76Q96K31 380 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 MBOAT7Q96N66 472 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 RIT2Q99578 217 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 NOC4LQ9BVI4 516 aaKnown RBP12.11□□□□□ -0.47
LINC00239-201ENST00000556973 RNPEPQ9H4A4 650 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 AZI2Q9H6S1 392 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 DDX25Q9UHL0 483 aaKnown RBP12.11□□□□□ -0.47
LINC00239-201ENST00000556973 KIF3AQ9Y496 699 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 KAT6AQ92794 2004 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 EMSYQ7Z589 1322 aa12.11□□□□□ -0.47
LINC00239-201ENST00000556973 IGKV6D-21A0A0A0MT36 114 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 C17orf102A2RUQ5 167 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 DDX39AO00148 427 aaKnown RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 MSH4O15457 936 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 CCNT1O60563 726 aaKnown RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 TDP2O95551 362 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 SMIM10L2AP0DMW4 78 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 SMIM10L2BP0DMW5 78 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 CYP2C9P11712 490 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 GCFC2P16383 781 aaKnown RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 CYP2C18P33260 490 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 SLC26A2P50443 739 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 STAT5BP51692 787 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 FPGSQ05932 587 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 NR5A1Q13285 461 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 PTK7Q13308 1070 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 BFSP2Q13515 415 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 EARS2Q5JPH6 523 aaKnown RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 HABP4Q5JVS0 413 aaKnown RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 MIS18BP1Q6P0N0 1132 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 SMAP1Q8IYB5 467 aaPredicted RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 CCDC155Q8N6L0 562 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 RETREG2Q8NC44 543 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 FBXO18Q8NFZ0 1043 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 SLC5A5Q92911 643 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 UIMC1Q96RL1 719 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 PPP1R12CQ9BZL4 782 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 PCDH10Q9P2E7 1040 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 TCEAL9Q9UHQ7 104 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.1□□□□□ -0.47
LINC00239-201ENST00000556973 NRCAMQ92823 1304 aa12.1□□□□□ -0.47
LINC00239-201ENST00000556973 TRIP12Q14669 1992 aaPredicted RBP12.09□□□□□ -0.47
LINC00239-201ENST00000556973 PITPNM1O00562 1244 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 CCNE2O96020 404 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 HOXC8P31273 242 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 FOSBP53539 338 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 GUCY1B3Q02153 619 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 PPIGQ13427 754 aaKnown RBP eCLIP12.09□□□□□ -0.47
LINC00239-201ENST00000556973 FAM160B1Q5W0V3 765 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 TRIM50Q86XT4 487 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 RPUSD2Q8IZ73 545 aaKnown RBP12.09□□□□□ -0.47
LINC00239-201ENST00000556973 TDHQ8IZJ6 230 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 CAGE1Q8TC20 777 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 AFAP1L1Q8TED9 768 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 ATP6V0A1Q93050 837 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 FAM20AQ96MK3 541 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 CTAGE1Q96RT6 745 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 PCYT2Q99447 389 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 TEKT3Q9BXF9 490 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 FOXP1Q9H334 677 aaPredicted RBP12.09□□□□□ -0.47
LINC00239-201ENST00000556973 PCDHA10Q9Y5I2 948 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 WDR81Q562E7 1941 aa12.09□□□□□ -0.47
LINC00239-201ENST00000556973 MYH9P35579 1960 aaKnown RBP12.09□□□□□ -0.47
LINC00239-201ENST00000556973 RRN3P2A6NIE6 340 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 WDR64B1ANS9 1081 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 TBX3O15119 743 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 GAS7O60861 476 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 PSMD10O75832 226 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 BAG4O95429 457 aaKnown RBP12.08□□□□□ -0.48
LINC00239-201ENST00000556973 PSAPP07602 524 aa12.08□□□□□ -0.48
LINC00239-201ENST00000556973 CSF2RAP15509 400 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms