RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725		A0A0D9SFI3	127 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	C17orf102	A2RUQ5	167 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	OPLAH	O14841	1288 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	TBX10	O75333	385 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	GGPS1	O95749	300 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	CFB	P00751	764 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	HSPD1	P10809	573 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	CTNNB1	P35222	781 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	BMPR1A	P36894	532 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	QRICH1	Q2TAL8	776 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	GPATCH4	Q5T3I0	446 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	MCF2L2	Q86YR7	1114 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	TBC1D10C	Q8IV04	446 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	FIBCD1	Q8N539	461 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	TMC2	Q8TDI7	906 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	EDA	Q92838	391 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	IFIH1	Q9BYX4	1025 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	RCAN3	Q9UKA8	241 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	MRPL11	Q9Y3B7	192 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	C5orf67	F2Z3F1	127 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725		H3BRB1	525 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	STXBP3	O00186	592 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	SMIM10L2A	P0DMW4	78 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	SMIM10L2B	P0DMW5	78 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	MX1	P20591	662 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	HOXC8	P31273	242 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	TCF15	Q12870	199 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	ADAM15	Q13444	863 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	CAMK1	Q14012	370 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	MFSD6	Q6ZSS7	791 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	BMP8A	Q7Z5Y6	402 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZNF589	Q86UQ0	364 aa	Predicted RBP	10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	IL31RA	Q8NI17	732 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	PTCD2	Q8WV60	388 aa	Known RBP	10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	PBXIP1	Q96AQ6	731 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	IL17RA	Q96F46	866 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	PDCD2L	Q9BRP1	358 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	MAF1	Q9H063	256 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	TUT1	Q9H6E5	874 aa	Known RBP	10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	JMJD4	Q9H9V9	463 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	TSHZ2	Q9NRE2	1034 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	HELLS	Q9NRZ9	838 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	SETD4	Q9NVD3	440 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	TELO2	Q9Y4R8	837 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	PCDHB15	Q9Y5E8	787 aa		10.08	□□□□□ -0.8
SYNE2-222	ENST00000556725	NEDD4	P46934	1319 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	SALL3	Q9BXA9	1300 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	DOCK5	Q9H7D0	1870 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	TMEM221	A6NGB7	291 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725		M0R296	226 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	NCK2	O43639	380 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	PPP1R11	O60927	126 aa	Predicted RBP	10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	RB1	P06400	928 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	UBA1	P22314	1058 aa	Known RBP	10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	HOXA13	P31271	388 aa	Predicted RBP	10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	HSD17B4	P51659	736 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	SMAD4	Q13485	552 aa	Known RBP	10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	MCMDC2	Q4G0Z9	681 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	TRIM67	Q6ZTA4	783 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	VSIG10L	Q86VR7	867 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	DGKH	Q86XP1	1220 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	PNMA1	Q8ND90	353 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	MSLNL	Q96KJ4	702 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	MLXIP	Q9HAP2	919 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	ALG13	Q9NP73	1137 aa	Known RBP	10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	FAM86C1	Q9NVL1	165 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	CD207	Q9UJ71	328 aa		10.07	□□□□□ -0.8
SYNE2-222	ENST00000556725	COL4A6	Q14031	1691 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	DHX16	O60231	1041 aa	Known RBP	10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	CHRNA1	P02708	482 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	LGALS2	P05162	132 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	DNAJB1	P25685	340 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	PTPN5	P54829	565 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	ADAM17	P78536	824 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	NMI	Q13287	307 aa	Predicted RBP	10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	PGM5	Q15124	567 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	STOX1	Q6ZVD7	989 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	ADGRD2	Q7Z7M1	963 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	STAG2	Q8N3U4	1231 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	EVI5L	Q96CN4	794 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	POP1	Q99575	1024 aa	Known RBP	10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	LMAN2L	Q9H0V9	348 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	RC3H2	Q9HBD1	1191 aa	Known RBP	10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	PLAGL2	Q9UPG8	496 aa		10.06	□□□□□ -0.8
SYNE2-222	ENST00000556725	ENPP3	O14638	875 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	KDM4A	O75164	1064 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	TGFB3	P10600	412 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	GHR	P10912	638 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	RRP1	P56182	461 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZXDA	P98168	799 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	ASPRV1	Q53RT3	343 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	FAM26D	Q5JW98	314 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	KCNV1	Q6PIU1	500 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	TRIM50	Q86XT4	487 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	ESR2	Q92731	530 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	APBB2	Q92870	758 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	CLP1	Q92989	425 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZNF689	Q96CS4	500 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	C11orf84	Q9BUA3	381 aa	Predicted RBP	10.05	□□□□□ -0.8

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