RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 FAM153BP0C7A2 387 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 NAT1P18440 290 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 EPHA5P54756 1037 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 RBL2Q08999 1139 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 LONRF2Q1L5Z9 754 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 TBC1D10BQ4KMP7 808 aaPredicted RBP7.81□□□□□ -1.16
PRPF39-209ENST00000556353 LRP10Q7Z4F1 713 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 PLEKHH3Q7Z736 793 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 DEPDC7Q96QD5 511 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 ZNF536O15090 1300 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 B4GALT3O60512 393 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 C6orf222P0C671 652 aaPredicted RBP7.8□□□□□ -1.16
PRPF39-209ENST00000556353 GABREP78334 506 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 NFKB2Q00653 900 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 GUCY1A3Q02108 690 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 RASA3Q14644 834 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 SURF1Q15526 300 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 CD276Q5ZPR3 534 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 HHIPL2Q6UWX4 724 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 DBX2Q6ZNG2 339 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 BORCS6Q96GS4 357 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 EXOC2Q96KP1 924 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 RBM15Q96T37 977 aaKnown RBP eCLIP7.8□□□□□ -1.16
PRPF39-209ENST00000556353 DHRS4Q9BTZ2 278 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 CD244Q9BZW8 370 aa7.8□□□□□ -1.16
PRPF39-209ENST00000556353 WNT9AO14904 365 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 FBXO21O94952 628 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 ENO2P09104 434 aaPredicted RBP7.79□□□□□ -1.16
PRPF39-209ENST00000556353 SMAD2Q15796 467 aaKnown RBP7.79□□□□□ -1.16
PRPF39-209ENST00000556353 SKIDA1Q1XH10 827 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 PHF19Q5T6S3 580 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 KLHL36Q8N4N3 616 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 FBXW5Q969U6 566 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 MBD6Q96DN6 1003 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 BARX1Q9HBU1 254 aaPredicted RBP7.79□□□□□ -1.16
PRPF39-209ENST00000556353 SNTG2Q9NY99 539 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 ARHGAP20Q9P2F6 1191 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 MRPS23Q9Y3D9 190 aaKnown RBP7.79□□□□□ -1.16
PRPF39-209ENST00000556353 PCDHA8Q9Y5H6 950 aa7.79□□□□□ -1.16
PRPF39-209ENST00000556353 FAM221BA6H8Z2 402 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 CHGBP05060 677 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 KRTAP10-2P60368 255 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 GPR19Q15760 415 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 ZC3H12BQ5HYM0 836 aaKnown RBP7.78□□□□□ -1.16
PRPF39-209ENST00000556353 SOGA3Q5TF21 947 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 GLB1LQ6UWU2 654 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 NLGN4XQ8N0W4 816 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 PCDH19Q8TAB3 1148 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 KRTAP4-2Q9BYR5 136 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 CATSPERZQ9NTU4 200 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 SMPD4Q9NXE4 827 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 ZFP69BQ9UJL9 534 aa7.78□□□□□ -1.16
PRPF39-209ENST00000556353 TCRBV5S4A2TA0A5A2 114 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ACOT7O00154 380 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ARVCFO00192 962 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 LAMTOR5O43504 91 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 COL6A1P12109 1028 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 MAGEA10P43363 369 aaPredicted RBP7.77□□□□□ -1.17
PRPF39-209ENST00000556353 GLRBP48167 497 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ST5P78524 1137 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 PFKPQ01813 784 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 SF3A1Q15459 793 aaKnown RBP7.77□□□□□ -1.17
PRPF39-209ENST00000556353 PKN3Q6P5Z2 889 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ARHGAP36Q6ZRI8 547 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 EP400NLQ6ZTU2 488 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 KBTBD2Q8IY47 623 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 SH3RF2Q8TEC5 729 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 LOXL4Q96JB6 756 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 SRPK1Q96SB4 655 aaKnown RBP7.77□□□□□ -1.17
PRPF39-209ENST00000556353 KRTAP4-11Q9BYQ6 195 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 SRPK3Q9UPE1 567 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ZDHHC9Q9Y397 364 aa7.77□□□□□ -1.17
PRPF39-209ENST00000556353 ZNF839A8K0R7 811 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 GSTA4O15217 222 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 APPP05067 770 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 SRGAP2CP0DJJ0 459 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 PYGMP11217 842 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 NFATC3Q12968 1075 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 FAM47CQ5HY64 1035 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 BTBD8Q5XKL5 378 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 C16orf59Q7L2K0 433 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 NUDT10Q8NFP7 164 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 IGDCC4Q8TDY8 1250 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 NUDT11Q96G61 164 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 SAMD11Q96NU1 681 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 RIC8BQ9NVN3 520 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 PCDHA9Q9Y5H5 950 aa7.76□□□□□ -1.17
PRPF39-209ENST00000556353 KLHL18O94889 574 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 KNG1P01042 644 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 PDE6AP16499 860 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 ZC3H7AQ8IWR0 971 aaKnown RBP7.75□□□□□ -1.17
PRPF39-209ENST00000556353 STPG3Q8N7X2 389 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 KISS1RQ969F8 398 aaPredicted RBP7.75□□□□□ -1.17
PRPF39-209ENST00000556353 ADAM29Q9UKF5 820 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 ATP23Q9Y6H3 246 aa7.75□□□□□ -1.17
PRPF39-209ENST00000556353 CRTAMO95727 393 aa7.74□□□□□ -1.17
PRPF39-209ENST00000556353 PTPN1P18031 435 aaKnown RBP7.74□□□□□ -1.17
PRPF39-209ENST00000556353 KRT15P19012 456 aa7.74□□□□□ -1.17
PRPF39-209ENST00000556353 CRY1Q16526 586 aa7.74□□□□□ -1.17
PRPF39-209ENST00000556353 FIGNQ5HY92 759 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms