RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PCDHA4Q9UN74 947 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 NOD1Q9Y239 953 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 SCN5AQ14524 2016 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 DHX15O43143 795 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 EIF5BO60841 1220 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 MARK3P27448 753 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 PPIGQ13427 754 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 GPNMBQ14956 572 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 PRR16Q569H4 304 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 Q7L0L9 218 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 DEFB128Q7Z7B8 93 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 BLIDQ8IZY5 108 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 BICD2Q8TD16 824 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 TBCKQ8TEA7 893 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 SEPT1Q8WYJ6 367 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 LENG9Q96B70 501 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 ZBTB10Q96DT7 871 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 RNPC3Q96LT9 517 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 PHF20Q9BVI0 1012 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 KATNAL1Q9BW62 490 aa13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 JPH1Q9HDC5 661 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-208ENST00000554165 STK36Q9NRP7 1315 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 TET1Q8NFU7 2136 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 FAM205CA6NFA0 338 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 GRXCR1A8MXD5 290 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 TREHO43280 583 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 CDKL5O76039 1030 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 SLC34A2O95436 690 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 IQCF3P0C7M6 154 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 RBM25P49756 843 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 ACTR2P61160 394 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 TRIM71Q2Q1W2 868 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 NIPA1Q7RTP0 329 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 CCDC83Q8IWF9 413 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 GIMAP8Q8ND71 665 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 IL23AQ9NPF7 189 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 CXXC1Q9P0U4 656 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 SLC9A2Q9UBY0 812 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 LIMCH1Q9UPQ0 1083 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 GTF3C3Q9Y5Q9 886 aa13.18□□□□□ -0.3
CCDC88C-208ENST00000554165 NFASCO94856 1347 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 MAFGO15525 162 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 TDP2O95551 362 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 HOXC8P31273 242 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 CIITAP33076 1130 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 TCTN1Q2MV58 587 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 EARS2Q5JPH6 523 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 TRAF7Q6Q0C0 670 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 OTOP2Q7RTS6 562 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 DAGLBQ8NCG7 672 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 GLG1Q92896 1179 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 SDF4Q9BRK5 362 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 OSBPL7Q9BZF2 842 aa13.17□□□□□ -0.3
CCDC88C-208ENST00000554165 C17orf102A2RUQ5 167 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 IPO5O00410 1097 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 MSH4O15457 936 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 LGR5O75473 907 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 CD2BP2O95400 341 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 CKBP12277 381 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 KCNA4P22459 653 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 NR5A1Q13285 461 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 PTK7Q13308 1070 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 INF2Q27J81 1249 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 ZNF618Q5T7W0 954 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 MCTP2Q6DN12 878 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 RETREG2Q8NC44 543 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 LMBR1Q8WVP7 490 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 ATP6V0A1Q93050 837 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 ZNF577Q9BSK1 485 aa13.16□□□□□ -0.3
CCDC88C-208ENST00000554165 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 FGBP02675 491 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 USP11P51784 963 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 ADAM17P78536 824 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 GUCY1B3Q02153 619 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 BFSP2Q13515 415 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 RASIP1Q5U651 963 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 ABHD15Q6UXT9 468 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 RUFY4Q6ZNE9 571 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 SERINC5Q86VE9 423 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 TRAPPC12Q8WVT3 735 aa13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 ZNF215Q9UL58 517 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-208ENST00000554165 SLC37A4O43826 429 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 NBNO60934 754 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 ATG7O95352 703 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 CTSHP09668 335 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 SELPP16109 830 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 ATP4AP20648 1035 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 THPOP40225 353 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 PBX2P40425 430 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 IGBP1P78318 339 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 RBL2Q08999 1139 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 PPFIA1Q13136 1202 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 PLCB4Q15147 1175 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 NONOQ15233 471 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 MARCH8Q5T0T0 291 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 GALNT17Q6IS24 598 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 PSRC1Q6PGN9 363 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 PIK3AP1Q6ZUJ8 805 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 LRRC8DQ7L1W4 858 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms