RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 RC3H2Q9HBD1 1191 aaKnown RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 RTEL1Q9NZ71 1219 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 MUTYHQ9UIF7 546 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 FRMPD4Q14CM0 1322 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 SPATA31C2B4DYI2 1134 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 LINC01565O15544 149 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 CYTH3O43739 400 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 RB1P06400 928 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 GNAT1P11488 350 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 ICAM3P32942 547 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 BMPR1AP36894 532 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 NEDD9Q14511 834 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 GRM4Q14833 912 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 GNPTABQ3T906 1256 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 B4GALNT3Q6L9W6 998 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 RUFY4Q6ZNE9 571 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 PLEKHM2Q8IWE5 1019 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 LMAN2LQ9H0V9 348 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 KCNH6Q9H252 994 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 RIOX1Q9H6W3 641 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 SENP2Q9HC62 589 aa10.51□□□□□ -0.73
SYNE2-209ENST00000553308 ZNF215Q9UL58 517 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-209ENST00000553308 MYO7AQ13402 2215 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 PIEZO1Q92508 2521 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 FIBPO43427 364 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 NCK2O43639 380 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 MGAT3Q09327 533 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 SMAD4Q13485 552 aaKnown RBP10.5□□□□□ -0.73
SYNE2-209ENST00000553308 LPIN1Q14693 890 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 HERC4Q5GLZ8 1057 aaPredicted RBP10.5□□□□□ -0.73
SYNE2-209ENST00000553308 RNF135Q8IUD6 432 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 PIBF1Q8WXW3 757 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 CLP1Q92989 425 aaKnown RBP10.5□□□□□ -0.73
SYNE2-209ENST00000553308 POP1Q99575 1024 aaKnown RBP10.5□□□□□ -0.73
SYNE2-209ENST00000553308 UPF3BQ9BZI7 483 aaKnown RBP10.5□□□□□ -0.73
SYNE2-209ENST00000553308 OSBPL3Q9H4L5 887 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 IGFLR1Q9H665 355 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 EHMT1Q9H9B1 1298 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 RWDD3Q9Y3V2 267 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 ZNF318Q5VUA4 2279 aa10.5□□□□□ -0.73
SYNE2-209ENST00000553308 KIAA1671Q9BY89 1806 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 BAZ2BQ9UIF8 2168 aaKnown RBP10.49□□□□□ -0.73
SYNE2-209ENST00000553308 PNMA6FA0A0J9YX94 578 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 ENPP3O14638 875 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 STAM2O75886 525 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 MMP1P03956 469 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 TRAF1Q13077 416 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 CAMK1Q14012 370 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 BTG3Q14201 252 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-209ENST00000553308 CHD1LQ86WJ1 897 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 SMC5Q8IY18 1101 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 LINC01599Q8WXQ3 324 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 ZNF689Q96CS4 500 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-209ENST00000553308 PHOX2BQ99453 314 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 ALG13Q9NP73 1137 aaKnown RBP10.49□□□□□ -0.73
SYNE2-209ENST00000553308 CD207Q9UJ71 328 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 NRCAMQ92823 1304 aa10.49□□□□□ -0.73
SYNE2-209ENST00000553308 STXBP3O00186 592 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 HIP1O00291 1037 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 IFIT3O14879 490 aaKnown RBP10.48□□□□□ -0.73
SYNE2-209ENST00000553308 DGKIO75912 1065 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 DNAJB1P25685 340 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 MARK3P27448 753 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 TCF7P36402 384 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-209ENST00000553308 NDUFV1P49821 464 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 PPFIA1Q13136 1202 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 ADAM15Q13444 863 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 FBXO47Q5MNV8 452 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 PCNX4Q63HM2 1172 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 TAF2Q6P1X5 1199 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 USP17L6PQ6QN14 398 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 ADGRD2Q7Z7M1 963 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 PRSS33Q8NF86 280 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 DNAJB3Q8WWF6 145 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 ZBTB10Q96DT7 871 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 MFSD14AQ96MC6 490 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 AGO3Q9H9G7 860 aaKnown RBP10.48□□□□□ -0.73
SYNE2-209ENST00000553308 TUBE1Q9UJT0 475 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 PLAGL2Q9UPG8 496 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 CDY2AQ9Y6F7 541 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 MRPL42Q9Y6G3 142 aaKnown RBP10.48□□□□□ -0.73
SYNE2-209ENST00000553308 TTC3P53804 2025 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 TECTAO75443 2155 aa10.48□□□□□ -0.73
SYNE2-209ENST00000553308 MBLAC1A4D2B0 266 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-209ENST00000553308 ATP9AO75110 1047 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 ITGB1P05556 798 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 NUCB1Q02818 461 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 TROAPQ12815 778 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 GRIK4Q16099 956 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 MARCH8Q5T0T0 291 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 TSHZ1Q6ZSZ6 1077 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 SMARCC2Q8TAQ2 1214 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 EDAQ92838 391 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 MSLNLQ96KJ4 702 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 SENP7Q9BQF6 1050 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 PLVAPQ9BX97 442 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 CLEC1BQ9P126 229 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 TAF6LQ9Y6J9 622 aa10.47□□□□□ -0.73
SYNE2-209ENST00000553308 KAT6AQ92794 2004 aa10.46□□□□□ -0.73
SYNE2-209ENST00000553308 GSTTP1A0A1W2PQM5 241 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms