RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 RUFY4Q6ZNE9 571 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 HEATR3Q7Z4Q2 680 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 MICU3Q86XE3 530 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 FANCBQ8NB91 859 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 SEPT1Q8WYJ6 367 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 TCEANC2Q96MN5 208 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 PCDHA6Q9UN73 950 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 PCDHA8Q9Y5H6 950 aa13.18□□□□□ -0.3
NEK3-204ENST00000552973 KIAA1217Q5T5P2 1943 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 SPDYE3A6NKU9 549 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 CHRNA1P02708 482 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 ADAM17P78536 824 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 HTRA4P83105 476 aaPredicted RBP13.17□□□□□ -0.3
NEK3-204ENST00000552973 MTMR1Q13613 665 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 TMTC3Q6ZXV5 915 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 GLG1Q92896 1179 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 TOP1MTQ969P6 601 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 GPRASP2Q96D09 838 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 ZBTB10Q96DT7 871 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 PGBD1Q96JS3 809 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 YME1L1Q96TA2 773 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 LMCD1Q9NZU5 365 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 UBIAD1Q9Y5Z9 338 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 TRIP12Q14669 1992 aaPredicted RBP13.17□□□□□ -0.3
NEK3-204ENST00000552973 MYO9BQ13459 2157 aa13.17□□□□□ -0.3
NEK3-204ENST00000552973 NRCAMQ92823 1304 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 CHD9Q3L8U1 2897 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 CAND2O75155 1236 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 GHRP10912 638 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 IGBP1P78318 339 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 PPFIA1Q13136 1202 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 GRIK4Q16099 956 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 EPC2Q52LR7 807 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 SYNE3Q6ZMZ3 975 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 GIMAP8Q8ND71 665 aaPredicted RBP13.16□□□□□ -0.3
NEK3-204ENST00000552973 CDHR1Q96JP9 859 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 NEK1Q96PY6 1258 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 IFIH1Q9BYX4 1025 aaKnown RBP13.16□□□□□ -0.3
NEK3-204ENST00000552973 EPHX3Q9H6B9 360 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 JADE2Q9NQC1 790 aa13.16□□□□□ -0.3
NEK3-204ENST00000552973 BAZ2BQ9UIF8 2168 aaKnown RBP13.15□□□□□ -0.3
NEK3-204ENST00000552973 MYH6P13533 1939 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 FAM26DQ5JW98 314 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 WWC2Q6AWC2 1192 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 TYW1BQ6NUM6 668 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 CYP2W1Q8TAV3 490 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 SP7Q8TDD2 431 aaPredicted RBP13.15□□□□□ -0.3
NEK3-204ENST00000552973 DNAJB3Q8WWF6 145 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 ERAP1Q9NZ08 941 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 BRPF3Q9ULD4 1205 aa13.15□□□□□ -0.3
NEK3-204ENST00000552973 ARP10275 920 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 KCNA5P22460 613 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 NAPAP54920 295 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 GPM6BQ13491 265 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 LPIN1Q14693 890 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 TAF2Q6P1X5 1199 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 SGMS1Q86VZ5 419 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 TMEM192Q8IY95 271 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 RASEFQ8IZ41 740 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 APBB2Q92870 758 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 PCYT2Q99447 389 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 FAM49AQ9H0Q0 323 aaPredicted RBP13.14□□□□□ -0.31
NEK3-204ENST00000552973 SMARCAD1Q9H4L7 1026 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 UBE2ZQ9H832 354 aaPredicted RBP13.14□□□□□ -0.31
NEK3-204ENST00000552973 TMEM260Q9NX78 707 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 TUBE1Q9UJT0 475 aa13.14□□□□□ -0.31
NEK3-204ENST00000552973 V9GY48 417 aaPredicted RBP13.14□□□□□ -0.31
NEK3-204ENST00000552973 PRRC2BQ5JSZ5 2229 aaKnown RBP13.14□□□□□ -0.31
NEK3-204ENST00000552973 PTPRSQ13332 1948 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.13□□□□□ -0.31
NEK3-204ENST00000552973 INSRRP14616 1297 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 MGAT3Q09327 533 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 TMEM62Q0P6H9 643 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 RTN1Q16799 776 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 ADCK5Q3MIX3 580 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 MARCH8Q5T0T0 291 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 RNF20Q5VTR2 975 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 APOA5Q6Q788 366 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 EP400NLQ6ZTU2 488 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 RSPH3Q86UC2 560 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 TRAPPC12Q8WVT3 735 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 KHSRPQ92945 711 aaKnown RBP eCLIP13.13□□□□□ -0.316e-7■■□□□ 14.4
NEK3-204ENST00000552973 MRPL38Q96DV4 380 aaKnown RBP13.13□□□□□ -0.31
NEK3-204ENST00000552973 IL17RAQ96F46 866 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 UIMC1Q96RL1 719 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 MXRA8Q9BRK3 442 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 EHMT1Q9H9B1 1298 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 JPH1Q9HDC5 661 aaPredicted RBP13.13□□□□□ -0.31
NEK3-204ENST00000552973 CD320Q9NPF0 282 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 KCNH7Q9NS40 1196 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 NAP1L2Q9ULW6 460 aaPredicted RBP13.13□□□□□ -0.31
NEK3-204ENST00000552973 CDY2AQ9Y6F7 541 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 MYH7BA7E2Y1 1941 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 CHD7Q9P2D1 2997 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 CNTNAP5Q8WYK1 1306 aa13.13□□□□□ -0.31
NEK3-204ENST00000552973 SMCO2A6NFE2 343 aa13.12□□□□□ -0.31
NEK3-204ENST00000552973 H3BNC9 293 aa13.12□□□□□ -0.31
NEK3-204ENST00000552973 DDX39AO00148 427 aaKnown RBP13.12□□□□□ -0.31
NEK3-204ENST00000552973 ENPP3O14638 875 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms