RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	DNAJA2	O60884	412 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	NBPF12	Q5TAG4	269 aa	Predicted RBP	3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	DIEXF	Q68CQ4	756 aa	Known RBP	3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	BICRAL	Q6AI39	1079 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	ZNF585A	Q6P3V2	769 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	TOM1L2	Q6ZVM7	507 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	FAM124A	Q86V42	546 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	COL23A1	Q86Y22	540 aa	Predicted RBP	3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	NAF1	Q96HR8	494 aa	Known RBP	3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	ASB16	Q96NS5	453 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	CHST7	Q9NS84	486 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	AP5S1	Q9NUS5	200 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	DBR1	Q9UK59	544 aa	Known RBP	3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	NSD3	Q9BZ95	1437 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	KDM2B	Q8NHM5	1336 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	THSD7B	Q9C0I4	1608 aa		3.41	□□□□□ -1.86
PTCH1-223	ENST00000551623	CNTNAP1	P78357	1384 aa		3.4	□□□□□ -1.86
PTCH1-223	ENST00000551623	SMARCA5	O60264	1052 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	UBOX5	O94941	541 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	BRD1	O95696	1058 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	BPNT1	O95861	308 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	PML	P29590	882 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	CTCF	P49711	727 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	FAM26F	Q5R3K3	315 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	PKD1L3	Q7Z443	1732 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	JAML	Q86YT9	394 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	ZBTB8A	Q96BR9	441 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	CHFR	Q96EP1	664 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	HIRIP3	Q9BW71	556 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	ZNF341	Q9BYN7	854 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	ANTXR1	Q9H6X2	564 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	PDLIM7	Q9NR12	457 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	PPP4R1L	Q9P1A2	415 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	TOGARAM1	Q9Y4F4	1720 aa		3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	TNRC18	O15417	2968 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCH1-223	ENST00000551623	KCP	Q6ZWJ8	1503 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	MEIS1	O00470	390 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	LAMTOR5	O43504	91 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	HTR3B	O95264	441 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	VAV1	P15498	845 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	CTSK	P43235	329 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	SELENOP	P49908	381 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	ATP2B2	Q01814	1243 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	SMAD4	Q13485	552 aa	Known RBP	3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	SURF1	Q15526	300 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	SPDYA	Q5MJ70	313 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	HLA-DQA1	Q5Y7H0	255 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	CCDC84	Q86UT8	332 aa	Predicted RBP	3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	AEBP1	Q8IUX7	1158 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	C16orf71	Q8IYS4	520 aa	Predicted RBP	3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	LINC00482	Q8N8I6	264 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	NAT16	Q8N8M0	369 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	KCNH5	Q8NCM2	988 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	DNER	Q8NFT8	737 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	CPA5	Q8WXQ8	436 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	DEF6	Q9H4E7	631 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	POGK	Q9P215	609 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	TLR6	Q9Y2C9	796 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	C5	P01031	1676 aa		3.39	□□□□□ -1.87
PTCH1-223	ENST00000551623	PDE4DIP	Q5VU43	2346 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	NPIPB8	E9PQR5	432 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	MUSK	O15146	869 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	IL2RB	P14784	551 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	RPL13	P26373	211 aa	Known RBP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	NANOS3	P60323	173 aa	Known RBP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	CACNB2	Q08289	660 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	SAFB2	Q14151	953 aa	Known RBP eCLIP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	RTP2	Q5QGT7	225 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	MEI1	Q5TIA1	1274 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	C9orf131	Q5VYM1	1079 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	BNC2	Q6ZN30	1099 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	BCAS3	Q9H6U6	928 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	TCAF1	Q9Y4C2	921 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	BRCA1	P38398	1863 aa	Known RBP	3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	PASK	Q96RG2	1323 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	USP31	Q70CQ4	1352 aa		3.38	□□□□□ -1.87
PTCH1-223	ENST00000551623	ARFGEF1	Q9Y6D6	1849 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	C4B	P0C0L5	1744 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	FAM221A	A4D161	298 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	NPEPPSL1	A6NEC2	478 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	GPR42	O15529	346 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	HSPA8	P11142	646 aa	Known RBP	3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	RLBP1	P12271	317 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	VEGFA	P15692	232 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	KCNA3	P22001	575 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	EIF4B	P23588	611 aa	Known RBP	3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	TACR1	P25103	407 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	THBS2	P35442	1172 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	CORO7	P57737	925 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	MCTP2	Q6DN12	878 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	CRTC3	Q6UUV7	619 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	TSPAN17	Q96FV3	270 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	FRMD6	Q96NE9	622 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	CEP89	Q96ST8	783 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	IKZF4	Q9H2S9	585 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	SEMA4A	Q9H3S1	761 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	GFOD1	Q9NXC2	390 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	CCNL1	Q9UK58	526 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	3.37	□□□□□ -1.87

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