RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 KLHL23Q8NBE8 558 aa16.39■□□□□ 0.21
PTCH1-217ENST00000548420 RIN2Q8WYP3 895 aaPredicted RBP16.39■□□□□ 0.21
PTCH1-217ENST00000548420 TLE6Q9H808 572 aa16.39■□□□□ 0.21
PTCH1-217ENST00000548420 TSHZ2Q9NRE2 1034 aa16.39■□□□□ 0.21
PTCH1-217ENST00000548420 ADD3Q9UEY8 706 aaKnown RBP16.39■□□□□ 0.21
PTCH1-217ENST00000548420 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.39■□□□□ 0.21
PTCH1-217ENST00000548420 CCDC171Q6TFL3 1326 aa16.39■□□□□ 0.21
PTCH1-217ENST00000548420 FLNBO75369 2602 aaKnown RBP16.38■□□□□ 0.21
PTCH1-217ENST00000548420 NFIBO00712 420 aa16.38■□□□□ 0.21
PTCH1-217ENST00000548420 KCNC3Q14003 757 aa16.38■□□□□ 0.21
PTCH1-217ENST00000548420 SLFN13Q68D06 897 aa16.38■□□□□ 0.21
PTCH1-217ENST00000548420 SERINC5Q86VE9 423 aa16.38■□□□□ 0.21
PTCH1-217ENST00000548420 STK11IPQ8N1F8 1099 aa16.38■□□□□ 0.21
PTCH1-217ENST00000548420 MRPL42Q9Y6G3 142 aaKnown RBP16.38■□□□□ 0.21
PTCH1-217ENST00000548420 TTC3P53804 2025 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 LOC102724159A0A0B4J2E5 919 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 PRDM1O75626 825 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 SLC3A2P08195 630 aaKnown RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 MFAP1P55081 439 aaKnown RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 BTG3Q14201 252 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 MFSD10Q14728 455 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 PWP2Q15269 919 aaKnown RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 LY6KQ17RY6 165 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 KIAA0753Q2KHM9 967 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 CWC27Q6UX04 472 aaKnown RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 SLC30A10Q6XR72 485 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 CENPQQ7L2Z9 268 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 ZNF444Q8N0Y2 327 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-217ENST00000548420 GMCL1P1Q8NEA9 526 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 NEDD1Q8NHV4 660 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 STAG1Q8WVM7 1258 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 PLIN4Q96Q06 1357 aa16.37■□□□□ 0.21
PTCH1-217ENST00000548420 CACNA1IQ9P0X4 2223 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 ZNF286BP0CG31 522 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 CASTP20810 708 aaKnown RBP16.36■□□□□ 0.21
PTCH1-217ENST00000548420 STAT2P52630 851 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 DUSP6Q16828 381 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 ANKRD54Q6NXT1 300 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 RASGRP2Q7LDG7 609 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 CHST3Q7LGC8 479 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 CEP95Q96GE4 821 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 NEK1Q96PY6 1258 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 DIAPH3Q9NSV4 1193 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 MTMR4Q9NYA4 1195 aa16.36■□□□□ 0.21
PTCH1-217ENST00000548420 ORC4O43929 436 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 F2P00734 622 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 CTSHP09668 335 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 CTDSPL2Q05D32 466 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 PDE4DQ08499 809 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 TMEM184AQ6ZMB5 413 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 POMKQ9H5K3 350 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 CCPG1Q9ULG6 757 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 SYNPO2Q9UMS6 1093 aa16.35■□□□□ 0.21
PTCH1-217ENST00000548420 NOVP48745 357 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 TFAP4Q01664 338 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 FAM160B2Q86V87 743 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 CHURC1Q8WUH1 139 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 RTP3Q9BQQ7 232 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 DSCC1Q9BVC3 393 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 IL25Q9H293 177 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 ERVK-5Q9HDB9 667 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 LIMD1Q9UGP4 676 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 PRR12Q9ULL5 1215 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 NR2E1Q9Y466 385 aa16.34■□□□□ 0.21
PTCH1-217ENST00000548420 MYH7BA7E2Y1 1941 aa16.33■□□□□ 0.21
PTCH1-217ENST00000548420 PTPDC1A2A3K4 754 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 DGKIO75912 1065 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 GH1P01241 217 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 SP9P0CG40 484 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 CHMLP26374 656 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 CALML3P27482 149 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 TECP42680 631 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 NAALADL2Q58DX5 795 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 CLEC4DQ8WXI8 215 aa16.33■□□□□ 0.2
PTCH1-217ENST00000548420 GCN1Q92616 2671 aaKnown RBP16.32■□□□□ 0.2
PTCH1-217ENST00000548420 ENPP3O14638 875 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 PPFIA3O75145 1194 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 TTLL1O95922 423 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 TSPY3P0CV98 308 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 TSPY8P0CW00 308 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 PCP11498 1178 aaKnown RBP16.32■□□□□ 0.2
PTCH1-217ENST00000548420 SDHBP21912 280 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 MCCP23508 829 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 ERVFC1P60507 584 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 DGKDQ16760 1214 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 KCTD1Q719H9 257 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 RTKNQ9BST9 563 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 IL17RBQ9NRM6 502 aa16.32■□□□□ 0.2
PTCH1-217ENST00000548420 ISY1Q9ULR0 285 aaKnown RBP16.32■□□□□ 0.2
PTCH1-217ENST00000548420 PLA2G6O60733 806 aa16.31■□□□□ 0.2
PTCH1-217ENST00000548420 ICAM1P05362 532 aa16.31■□□□□ 0.2
PTCH1-217ENST00000548420 TGM1P22735 817 aa16.31■□□□□ 0.2
PTCH1-217ENST00000548420 IKQ13123 557 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-217ENST00000548420 DHX37Q8IY37 1157 aaKnown RBP16.31■□□□□ 0.2
PTCH1-217ENST00000548420 CDV3Q9UKY7 258 aaKnown RBP16.31■□□□□ 0.2
PTCH1-217ENST00000548420 CEP295Q9C0D2 2601 aa16.3■□□□□ 0.2
PTCH1-217ENST00000548420 TREHO43280 583 aa16.3■□□□□ 0.2
PTCH1-217ENST00000548420 HOXC8P31273 242 aa16.3■□□□□ 0.2
PTCH1-217ENST00000548420 PPM1JQ5JR12 505 aa16.3■□□□□ 0.2
PTCH1-217ENST00000548420 PPP4R3BQ5MIZ7 849 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms