RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 MSL3Q8N5Y2 521 aaKnown RBP13.83□□□□□ -0.2
PTCH1-212ENST00000546744 SPATA4Q8NEY3 305 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 PAGE5Q96GU1 130 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 NUDCD1Q96RS6 583 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 PCDHA12Q9UN75 941 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 PARP3Q9Y6F1 533 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 SPATA31A3Q5VYP0 1347 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 ITGA6P23229 1130 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 MAP7D3Q8IWC1 876 aa13.83□□□□□ -0.2
PTCH1-212ENST00000546744 ENAHQ8N8S7 591 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-212ENST00000546744 MRPL47Q9HD33 250 aaKnown RBP13.83□□□□□ -0.2
PTCH1-212ENST00000546744 SMCO2A6NFE2 343 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 LARGE1O95461 756 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 HNRNPCP07910 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 CHRNA3P32297 505 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 LSP1P33241 339 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 SF3A3Q12874 501 aaKnown RBP eCLIP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 HELBQ8NG08 1087 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 C1orf112Q9NSG2 853 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 HPCAL4Q9UM19 191 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 FSCBQ5H9T9 825 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 ALKBH5Q6P6C2 394 aaKnown RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 PDZD4Q76G19 769 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 TRAIPQ9BWF2 469 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 SNX12Q9UMY4 172 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 SETD1AO15047 1707 aaKnown RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 ERBB3P21860 1342 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 POC1B-GALNT4F8VUJ3 575 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 NSFP46459 744 aaKnown RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 MFAP3P55082 362 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 GOLGA8FQ08AF8 430 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 GOLGA8DPQ0D2H9 430 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 GRAMD1BQ3KR37 738 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 SRRM1Q8IYB3 904 aaKnown RBP13.82□□□□□ -0.2
PTCH1-212ENST00000546744 NFATC2IPQ8NCF5 419 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 USTQ9Y2C2 406 aa13.82□□□□□ -0.2
PTCH1-212ENST00000546744 GPC4O75487 556 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 HARSP12081 509 aaKnown RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PDE6AP16499 860 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 EEF1DP29692 281 aaKnown RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PLA2G4AP47712 749 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 RCN2Q14257 317 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PDZD8Q8NEN9 1154 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CSRNP1Q96S65 589 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 ECT2Q9H8V3 914 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 ZFP69BQ9UJL9 534 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 ACADSP16219 412 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 TMED2Q15363 201 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 FBXW10Q5XX13 1052 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CASC4Q6P4E1 433 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CCDC125Q86Z20 511 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 WDR24Q96S15 920 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 FUT8Q9BYC5 575 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 TRIM15Q9C019 465 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 MAST3O60307 1309 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 FTCDO95954 541 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 FOSP01100 380 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 MMEL1Q495T6 779 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CEP70Q8NHQ1 597 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 UHMK1Q8TAS1 419 aaKnown RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 FHOD1Q9Y613 1164 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PSMD14O00487 310 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 MAN1A2O60476 641 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CCDC22O60826 627 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 IL2RBP14784 551 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 PSMC2P35998 433 aaKnown RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 SLC7A5Q01650 507 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CYLC2Q14093 348 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CRLF3Q8IUI8 442 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 MMGT1Q8N4V1 131 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 CCDC138Q96M89 665 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.81□□□□□ -0.2
PTCH1-212ENST00000546744 SLC39A2Q9NP94 309 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 MRGBPQ9NV56 204 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 BAG5Q9UL15 447 aa13.81□□□□□ -0.2
PTCH1-212ENST00000546744 TTC36A6NLP5 189 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PRPF3O43395 683 aaKnown RBP13.8□□□□□ -0.2
PTCH1-212ENST00000546744 P4HA1P13674 534 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PMS2P54278 862 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 STX1BP61266 288 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PTK2Q05397 1052 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 ATP6V0A4Q9HBG4 840 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 AXIN2Q9Y2T1 843 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PFASO15067 1338 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 A0A1B0GTH6 734 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 KRT37O76014 449 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 CXorf38Q8TB03 319 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 RMDN2Q96LZ7 410 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 FOXP3Q9BZS1 431 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 BTG4Q9NY30 223 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PNMA2Q9UL42 364 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 SH2B2O14492 632 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-212ENST00000546744 MX2P20592 715 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 NR2F2P24468 414 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 CXCR5P32302 372 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 CYP27A1Q02318 531 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 CTDSPL2Q05D32 466 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 KPNB1Q14974 876 aaKnown RBP13.8□□□□□ -0.2
PTCH1-212ENST00000546744 NBPF5PQ86XG9 351 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms