RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 USP44Q9H0E7 712 aa4.95□□□□□ -1.62
SNHG1-220ENST00000544550 KCNMB2Q9Y691 235 aa4.95□□□□□ -1.62
SNHG1-220ENST00000544550 ATAD5Q96QE3 1844 aa4.95□□□□□ -1.62
SNHG1-220ENST00000544550 TNKSO95271 1327 aa4.95□□□□□ -1.62
SNHG1-220ENST00000544550 UMODL1Q5DID0 1318 aa4.95□□□□□ -1.62
SNHG1-220ENST00000544550 PLXNA1Q9UIW2 1896 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 MYH13Q9UKX3 1938 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 WDR46O15213 610 aaKnown RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 B4GALT4O60513 344 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 UBTFL1P0CB47 393 aaPredicted RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 STAT3P40763 770 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 KCNJ6P48051 423 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 ZP2Q05996 745 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 TTLL4Q14679 1199 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 TMEM132BQ14DG7 1078 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 PTPROQ16827 1216 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 TIGD5Q53EQ6 642 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 HERC4Q5GLZ8 1057 aaPredicted RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 EFHC2Q5JST6 749 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 TMED8Q6PL24 325 aaPredicted RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 XKR5Q6UX68 686 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 NEK9Q8TD19 979 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 GIPC2Q8TF65 315 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 GDPD5Q8WTR4 605 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 DDX11Q96FC9 970 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 SCLYQ96I15 445 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 CEP63Q96MT8 703 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 NEUROD6Q96NK8 337 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 ZCCHC2Q9C0B9 1178 aaKnown RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 NIF3L1Q9GZT8 377 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 WNT8AQ9H1J5 351 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 COPRSQ9NQ92 184 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 SAP30BPQ9UHR5 308 aaKnown RBP4.94□□□□□ -1.62
SNHG1-220ENST00000544550 USP20Q9Y2K6 914 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 XIRP2A4UGR9 3374 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 A0A0G2JMZ2 1700 aa4.94□□□□□ -1.62
SNHG1-220ENST00000544550 MYH2Q9UKX2 1941 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 LAMA2P24043 3122 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 A6NHS1 94 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 PROB1E7EW31 1015 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 MPHOSPH10O00566 681 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 EFSO43281 561 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 NCK2O43639 380 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 PPFIA3O75145 1194 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 SNAI1O95863 264 aaPredicted RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 FAM157BP0CG42 384 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 EPB42P16452 691 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 ID4P47928 161 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 ERVK-21P61565 698 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TAGLNQ01995 201 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TNFAIP2Q03169 654 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TCF15Q12870 199 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 SEPT2Q15019 361 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TRIP4Q15650 581 aaPredicted RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 DBN1Q16643 649 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 FSCN1Q16658 493 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 LRRFIP1Q32MZ4 808 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CCDC144BQ3MJ40 725 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 C8orf34Q49A92 452 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 FIGNL1Q6PIW4 674 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CXCL17Q6UXB2 119 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TMEM179Q6ZVK1 233 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 NOL8Q76FK4 1167 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 DEFB128Q7Z7B8 93 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CMTR1Q8N1G2 835 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 Q8N3U1 123 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CCDC155Q8N6L0 562 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 EDAQ92838 391 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 ATOH1Q92858 354 aaPredicted RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 GMCL1Q96IK5 515 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TGS1Q96RS0 853 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CRBNQ96SW2 442 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TEX13BQ9BXU2 312 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 FTOQ9C0B1 505 aaKnown RBP eCLIP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 AP5M1Q9H0R1 490 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TRPV6Q9H1D0 765 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 ALDH8A1Q9H2A2 487 aaPredicted RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 VCPKMTQ9H867 229 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 CUEDC1Q9NWM3 386 aaPredicted RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 ADAMTS5Q9UNA0 930 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 FNDC3AQ9Y2H6 1198 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 Q9Y3F1 56 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 PCDHGC4Q9Y5F7 938 aa4.93□□□□□ -1.62
SNHG1-220ENST00000544550 TCF20Q9UGU0 1960 aaKnown RBP4.93□□□□□ -1.62
SNHG1-220ENST00000544550 A0A1W2PRG0 241 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 TMEM221A6NGB7 291 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 E9PSI1 815 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 M0R296 226 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 VWA5AO00534 786 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 ATXN7O15265 892 aaPredicted RBP4.92□□□□□ -1.62
SNHG1-220ENST00000544550 CTAGE5O15320 804 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 EFCAB14O75071 495 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 PARNO95453 639 aaKnown RBP4.92□□□□□ -1.62
SNHG1-220ENST00000544550 POLR3DP05423 398 aaPredicted RBP4.92□□□□□ -1.62
SNHG1-220ENST00000544550 IQCF3P0C7M6 154 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 GUCY1A2P33402 732 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 SHMT1P34896 483 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 MCAMP43121 646 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 BEX3Q00994 111 aa4.92□□□□□ -1.62
SNHG1-220ENST00000544550 ICA1Q05084 483 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms