RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CERS4Q9HA82 394 aa15.03■□□□□ -0
RTN3-212ENST00000543123 SETD4Q9NVD3 440 aa15.03■□□□□ -0
RTN3-212ENST00000543123 ERAP1Q9NZ08 941 aa15.03■□□□□ -0
RTN3-212ENST00000543123 PCDHA6Q9UN73 950 aa15.03■□□□□ -0
RTN3-212ENST00000543123 PCDHA8Q9Y5H6 950 aa15.03■□□□□ -0
RTN3-212ENST00000543123 MTCH2Q9Y6C9 303 aa15.03■□□□□ -0
RTN3-212ENST00000543123 REV3LO60673 3130 aa15.02■□□□□ -0
RTN3-212ENST00000543123 CCDC196A0A1B0GTZ2 297 aa15.02■□□□□ -0
RTN3-212ENST00000543123 GOLGA8AA7E2F4 631 aa15.02■□□□□ -0
RTN3-212ENST00000543123 GOLGA8BA8MQT2 603 aa15.02■□□□□ -0
RTN3-212ENST00000543123 KCNA2P16389 499 aa15.02■□□□□ -0
RTN3-212ENST00000543123 ITGB5P18084 799 aa15.02■□□□□ -0
RTN3-212ENST00000543123 ADCY7P51828 1080 aa15.02■□□□□ -0
RTN3-212ENST00000543123 PLEKHG4Q58EX7 1191 aa15.02■□□□□ -0
RTN3-212ENST00000543123 RSPH3Q86UC2 560 aa15.02■□□□□ -0
RTN3-212ENST00000543123 LMBR1Q8WVP7 490 aa15.02■□□□□ -0
RTN3-212ENST00000543123 SEPT1Q8WYJ6 367 aa15.02■□□□□ -0
RTN3-212ENST00000543123 GLG1Q92896 1179 aa15.02■□□□□ -0
RTN3-212ENST00000543123 TGS1Q96RS0 853 aaKnown RBP15.02■□□□□ -0
RTN3-212ENST00000543123 RIC8AQ9NPQ8 531 aa15.02■□□□□ -0
RTN3-212ENST00000543123 JADE2Q9NQC1 790 aa15.02■□□□□ -0
RTN3-212ENST00000543123 PRDM6Q9NQX0 595 aa15.02■□□□□ -0
RTN3-212ENST00000543123 INSL6Q9Y581 213 aa15.02■□□□□ -0
RTN3-212ENST00000543123 UBIAD1Q9Y5Z9 338 aa15.02■□□□□ -0
RTN3-212ENST00000543123 KLF18A0A0U1RQI7 1052 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 CTSHP09668 335 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 HOXD11P31277 338 aaPredicted RBP15.01□□□□□ -0.01
RTN3-212ENST00000543123 EXOSC10Q01780 885 aaKnown RBP15.01□□□□□ -0.01
RTN3-212ENST00000543123 PPFIA1Q13136 1202 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 AP3B2Q13367 1082 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 COL9A3Q14050 684 aaPredicted RBP15.01□□□□□ -0.01
RTN3-212ENST00000543123 WWC2Q6AWC2 1192 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 MYOCDQ8IZQ8 938 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 DBF4BQ8NFT6 615 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 SDF4Q9BRK5 362 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 SMARCAD1Q9H4L7 1026 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 JPH1Q9HDC5 661 aaPredicted RBP15.01□□□□□ -0.01
RTN3-212ENST00000543123 LMCD1Q9NZU5 365 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 COG5Q9UP83 839 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 PTPRSQ13332 1948 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 DOCK5Q9H7D0 1870 aa15.01□□□□□ -0.01
RTN3-212ENST00000543123 LCHNA4D1U4 455 aa15□□□□□ -0.01
RTN3-212ENST00000543123 TNFRSF10AO00220 468 aa15□□□□□ -0.01
RTN3-212ENST00000543123 RFXAPO00287 272 aa15□□□□□ -0.01
RTN3-212ENST00000543123 GRB10Q13322 594 aa15□□□□□ -0.01
RTN3-212ENST00000543123 TMCO2Q7Z6W1 182 aaPredicted RBP15□□□□□ -0.01
RTN3-212ENST00000543123 RPAINQ86UA6 219 aa15□□□□□ -0.01
RTN3-212ENST00000543123 AZI2Q9H6S1 392 aa15□□□□□ -0.01
RTN3-212ENST00000543123 BARHL2Q9NY43 387 aa15□□□□□ -0.01
RTN3-212ENST00000543123 TUBE1Q9UJT0 475 aa15□□□□□ -0.01
RTN3-212ENST00000543123 NAP1L2Q9ULW6 460 aaPredicted RBP15□□□□□ -0.01
RTN3-212ENST00000543123 MICAL3Q7RTP6 2002 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 PRRC2BQ5JSZ5 2229 aaKnown RBP14.99□□□□□ -0.01
RTN3-212ENST00000543123 LINC01553A4QN01 128 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 EPOPA6NHQ4 379 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 ATP9AO75110 1047 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 ARHGEF15O94989 841 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 METAP2P50579 478 aaKnown RBP eCLIP14.99□□□□□ -0.01
RTN3-212ENST00000543123 ERVK-21P61565 698 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 ADAM17P78536 824 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 TCTN1Q2MV58 587 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 CEP55Q53EZ4 464 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 FAM26DQ5JW98 314 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 MCTP2Q6DN12 878 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 FAM117BQ6P1L5 589 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 RASEFQ8IZ41 740 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 ADAMTS19Q8TE59 1207 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 CCDC12Q8WUD4 166 aaPredicted RBP14.99□□□□□ -0.01
RTN3-212ENST00000543123 CCDC136Q96JN2 1154 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 TCEANC2Q96MN5 208 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 SAMD11Q96NU1 681 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 MXRA8Q9BRK3 442 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 IFIH1Q9BYX4 1025 aaKnown RBP14.99□□□□□ -0.01
RTN3-212ENST00000543123 KCNH7Q9NS40 1196 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 PKD2L1Q9P0L9 805 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 SLC9A2Q9UBY0 812 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 BRPF3Q9ULD4 1205 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 V9GY48 417 aaPredicted RBP14.99□□□□□ -0.01
RTN3-212ENST00000543123 COL4A4P53420 1690 aaPredicted RBP14.99□□□□□ -0.01
RTN3-212ENST00000543123 KAT6AQ92794 2004 aa14.99□□□□□ -0.01
RTN3-212ENST00000543123 NFASCO94856 1347 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 GSTTP1A0A1W2PQM5 241 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 SMCO2A6NFE2 343 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 RRN3P2A6NIE6 340 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 STXBP3O00186 592 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 REC8O95072 547 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 MARK3P27448 753 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 FUT2Q10981 343 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 MKRN4PQ13434 485 aaPredicted RBP14.98□□□□□ -0.01
RTN3-212ENST00000543123 GRIK4Q16099 956 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 ADCK5Q3MIX3 580 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.98□□□□□ -0.011e-6■■■■■ 27.3
RTN3-212ENST00000543123 UHRF1Q96T88 793 aaPredicted RBP14.98□□□□□ -0.01
RTN3-212ENST00000543123 YME1L1Q96TA2 773 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 ANO3Q9BYT9 981 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 MTUS1Q9ULD2 1270 aa14.98□□□□□ -0.01
RTN3-212ENST00000543123 COL4A6Q14031 1691 aa14.97□□□□□ -0.01
RTN3-212ENST00000543123 ZNF76P36508 570 aa14.97□□□□□ -0.01
RTN3-212ENST00000543123 SREBF1P36956 1147 aa14.97□□□□□ -0.01
RTN3-212ENST00000543123 SLC26A2P50443 739 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms