RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TRIM9Q9C026 710 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 DNAJC25Q9H1X3 360 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 RMND1Q9NWS8 449 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 CPA4Q9UI42 421 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 DNM3Q9UQ16 869 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 DIS3Q9Y2L1 958 aaKnown RBP19.84■□□□□ 0.77
CLIP1-215ENST00000541108 CHMP2AO43633 222 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 JAK3P52333 1124 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 GRB14Q14449 540 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 DEFB115Q30KQ5 88 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 KCNK18Q7Z418 384 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 PLEKHH3Q7Z736 793 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 GIMAP8Q8ND71 665 aaPredicted RBP19.84■□□□□ 0.77
CLIP1-215ENST00000541108 BPIFA3Q9BQP9 254 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 PKD2L1Q9P0L9 805 aa19.84■□□□□ 0.77
CLIP1-215ENST00000541108 PLXNB2O15031 1838 aa19.83■□□□□ 0.77
CLIP1-215ENST00000541108 P4HBP07237 508 aaKnown RBP19.83■□□□□ 0.76
CLIP1-215ENST00000541108 APLP1P51693 650 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 MCM6Q14566 821 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 KCNB1Q14721 858 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 DPCR1Q3MIW9 517 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 CT47A1Q5JQC4 288 aaPredicted RBP19.83■□□□□ 0.76
CLIP1-215ENST00000541108 SMAP1Q8IYB5 467 aaPredicted RBP19.83■□□□□ 0.76
CLIP1-215ENST00000541108 MLKLQ8NB16 471 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 RNF214Q8ND24 703 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 BLZF1Q9H2G9 400 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 RGL1Q9NZL6 768 aa19.83■□□□□ 0.76
CLIP1-215ENST00000541108 WDR64B1ANS9 1081 aa19.82■□□□□ 0.76
CLIP1-215ENST00000541108 DDX39AO00148 427 aaKnown RBP19.82■□□□□ 0.76
CLIP1-215ENST00000541108 CA12O43570 354 aa19.82■□□□□ 0.76
CLIP1-215ENST00000541108 RPN1P04843 607 aaKnown RBP19.82■□□□□ 0.76
CLIP1-215ENST00000541108 CASP1P29466 404 aa19.82■□□□□ 0.76
CLIP1-215ENST00000541108 CYP4F22Q6NT55 531 aa19.82■□□□□ 0.76
CLIP1-215ENST00000541108 PAXIP1Q6ZW49 1069 aaPredicted RBP19.82■□□□□ 0.76
CLIP1-215ENST00000541108 GTPBP4Q9BZE4 634 aaKnown RBP19.82■□□□□ 0.76
CLIP1-215ENST00000541108 DACH1Q9UI36 760 aa19.82■□□□□ 0.76
CLIP1-215ENST00000541108 POTEFA5A3E0 1075 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SLC15A5A6NIM6 579 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 E9PMD0 336 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 COBLO75128 1261 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 BMP6P22004 513 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 CYP4A11Q02928 519 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 POTEGQ6S5H5 508 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SEPT14Q6ZU15 432 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 TPH2Q8IWU9 490 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SYT2Q8N9I0 419 aaPredicted RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 DYDC2Q96IM9 177 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 NACC1Q96RE7 527 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 JPH1Q9HDC5 661 aaPredicted RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 BMP2KQ9NSY1 1161 aaPredicted RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SLC5A4Q9NY91 659 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SAMM50Q9Y512 469 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 PVALEFA0A1B0GWK0 134 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 PLA2G4BP0C869 781 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 CTTNQ14247 550 aaKnown RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 NEDD9Q14511 834 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 ISM2Q6H9L7 571 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 C11orf57Q6ZUT1 292 aaPredicted RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 DPP9Q86TI2 863 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 CCDC47Q96A33 483 aaKnown RBP19.81■□□□□ 0.76
CLIP1-215ENST00000541108 ZSWIM4Q9H7M6 989 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 CBX8Q9HC52 389 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 SLC9A2Q9UBY0 812 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 PCDHA10Q9Y5I2 948 aa19.81■□□□□ 0.76
CLIP1-215ENST00000541108 A0A087WWV3 80 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 LRRC37A2A6NM11 1700 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 LYPLA2O95372 231 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 EYA4O95677 639 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 CCNE2O96020 404 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 XRCC6P12956 609 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLIP1-215ENST00000541108 SLC12A3P55017 1021 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 CRHR2Q13324 411 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 DHX8Q14562 1220 aaKnown RBP19.8■□□□□ 0.76
CLIP1-215ENST00000541108 MAMDC4Q6UXC1 1216 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 ZIC5Q96T25 663 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 PLXNA1Q9UIW2 1896 aa19.8■□□□□ 0.76
CLIP1-215ENST00000541108 ZNF236Q9UL36 1845 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 MYMKA6NI61 221 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 KLRC4O43908 158 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 RHOBTB3O94955 611 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 QARSP47897 775 aaKnown RBP19.79■□□□□ 0.76
CLIP1-215ENST00000541108 PSMC6P62333 389 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 SP2Q02086 613 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 IQCB1Q15051 598 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 ZNF658Q5TYW1 1059 aaPredicted RBP19.79■□□□□ 0.76
CLIP1-215ENST00000541108 MSL3Q8N5Y2 521 aaKnown RBP19.79■□□□□ 0.76
CLIP1-215ENST00000541108 DDX12PQ92771 950 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 CAPNS2Q96L46 248 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 LXNQ9BS40 222 aa19.79■□□□□ 0.76
CLIP1-215ENST00000541108 ASIC1P78348 528 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 MORN1Q5T089 497 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 ARMCX2Q7L311 632 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 C4orf19Q8IY42 314 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 DKC1O60832 514 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLIP1-215ENST00000541108 PSMC5P62195 406 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 GRM1Q13255 1194 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 KMT5BQ4FZB7 885 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 UNC13DQ70J99 1090 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 KCND2Q9NZV8 630 aa19.78■□□□□ 0.76
CLIP1-215ENST00000541108 DDX41Q9UJV9 622 aaKnown RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms