RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 ARFGAP3Q9NP61 516 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 NDUFB10O96000 172 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 GH1P01241 217 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 MCM6Q14566 821 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 GIPC1O14908 333 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 PEX3P56589 373 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 MB21D2Q8IYB1 491 aaPredicted RBP15.51■□□□□ 0.07
COLCA1-204ENST00000540738 INPP5FQ9Y2H2 1132 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 NMT2O60551 498 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 C6orf222P0C671 652 aaPredicted RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 NDUFA8P51970 172 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 OSTNP61366 133 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SRGAP1Q7Z6B7 1085 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 PAIP2Q9BPZ3 127 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SLC9A2Q9UBY0 812 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 IPO5O00410 1097 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 CLDN3O15551 220 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 IVLP07476 585 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 EEF1GP26641 437 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 RGS2P41220 211 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 KYAT1Q16773 422 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 C16orf86Q6ZW13 317 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SIX6OS1Q8N1H7 587 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 RNF139Q8WU17 664 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SPZ1Q9BXG8 430 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 ASIC3Q9UHC3 531 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 UTP11Q9Y3A2 253 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 GADD45BO75293 160 aaPredicted RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 PLCG1P19174 1290 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 MXI1P50539 228 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 POLR2FP61218 127 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SLITRK6Q9H5Y7 841 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 GABBR1Q9UBS5 961 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 NXF1Q9UBU9 619 aaKnown RBP15.5■□□□□ 0.07
COLCA1-204ENST00000540738 PCDHA10Q9Y5I2 948 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 UBE2Q2LH0YL09 131 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 ATP5DP30049 168 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 ITIH3Q06033 890 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 SWSAP1Q6NVH7 229 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 BEST2Q8NFU1 509 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 IFT81Q8WYA0 676 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 LY9Q9HBG7 655 aa15.5■□□□□ 0.07
COLCA1-204ENST00000540738 CSPG5O95196 566 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF543Q08ER8 600 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 C6orf163Q5TEZ5 329 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 PADI6Q6TGC4 694 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CYB5R4Q7L1T6 521 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CNOT6LQ96LI5 555 aaKnown RBP15.49■□□□□ 0.07
COLCA1-204ENST00000540738 ADGRB1O14514 1584 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CEP104O60308 925 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF75DP51815 510 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 LGSNQ5TDP6 509 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 PRAMEF18Q5VWM3 479 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 MXD3Q9BW11 206 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 IQGAP1P46940 1657 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CIITAP33076 1130 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 TSPY1Q01534 308 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 BFSP1Q12934 665 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 PDIA6Q15084 440 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF658Q5TYW1 1059 aaPredicted RBP15.49■□□□□ 0.07
COLCA1-204ENST00000540738 PCIF1Q9H4Z3 704 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 NEURL4Q96JN8 1562 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 THAP12O43422 761 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 H2AFZP0C0S5 128 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 SKIV2LQ15477 1246 aaKnown RBP15.49■□□□□ 0.07
COLCA1-204ENST00000540738 H2AFVQ71UI9 128 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 GPC2Q8N158 579 aa15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CPSF3Q9UKF6 684 aaKnown RBP15.49■□□□□ 0.07
COLCA1-204ENST00000540738 CRCPO75575 148 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 RNASE9P60153 205 aaKnown RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 CACNB1Q02641 598 aaPredicted RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 HS1BP3Q53T59 392 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 RNF180Q86T96 592 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 PPP4CP60510 307 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 CXCL9Q07325 125 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 C1orf228Q6PIY5 440 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 SGMS1Q86VZ5 419 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 THNSL1Q8IYQ7 743 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 LINC00301Q8NCQ3 95 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 RSAD2Q8WXG1 361 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 JPH1Q9HDC5 661 aaPredicted RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 BCL9O00512 1426 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 POLRMTO00411 1230 aaKnown RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 DYNC1LI2O43237 492 aaPredicted RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 PPM1EQ8WY54 764 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ABCB4P21439 1286 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF827Q17R98 1081 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF568Q3ZCX4 644 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 SMARCAD1Q9H4L7 1026 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 RASSF7Q02833 373 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ITKQ08881 620 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 BAATQ14032 418 aaPredicted RBP15.48■□□□□ 0.07
COLCA1-204ENST00000540738 PPP2R5EQ16537 467 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 CEP55Q53EZ4 464 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ZNF667Q5HYK9 610 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 XRRA1Q6P2D8 792 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 ZDHHC15Q96MV8 337 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 CPVLQ9H3G5 476 aa15.48■□□□□ 0.07
COLCA1-204ENST00000540738 BCORL1Q5H9F3 1711 aa15.47■□□□□ 0.07
COLCA1-204ENST00000540738 DPYSL4O14531 572 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms