RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SEPT4O43236 478 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 GAS7O60861 476 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 GADD45BO75293 160 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-204ENST00000540669 LGR5O75473 907 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 LYPLA2O95372 231 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 SMPD1P17405 629 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 CMA1P23946 247 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 NEDD9Q14511 834 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 TTLL4Q14679 1199 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 CCDC144BQ3MJ40 725 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 TMEM119Q4V9L6 283 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 IQSEC1Q6DN90 963 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 DTHD1Q6ZMT9 781 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 SEPT14Q6ZU15 432 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 SMAP1Q8IYB5 467 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-204ENST00000540669 CLIC6Q96NY7 704 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 TEKT3Q9BXF9 490 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 GOLPH3LQ9H4A5 285 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 JPH1Q9HDC5 661 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-204ENST00000540669 PCDHA12Q9UN75 941 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 Q9Y3F1 56 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 DNAH12Q6ZR08 3092 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 GSTTP1A0A1W2PQM5 241 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 A6NJR5 290 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 PP2D1A8MPX8 630 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 ADAMTS4O75173 837 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 STBD1O95210 358 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 GGPS1O95749 300 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 INHAP05111 366 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 SPATA31C1P0DKV0 1188 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 PRKAR2AP13861 404 aaKnown RBP11.88□□□□□ -0.51
VPS33A-204ENST00000540669 AKR1A1P14550 325 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 NCLP19338 710 aaKnown RBP11.88□□□□□ -0.51
VPS33A-204ENST00000540669 MUTP22033 750 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 PTGS1P23219 599 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 SFNP31947 248 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 GRK4P32298 578 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 TXKP42681 527 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 ME1P48163 572 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 UBE2HP62256 183 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 CSPP1Q1MSJ5 1256 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 NAALADL2Q58DX5 795 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 MFSD14CQ5VZR4 134 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 ABHD15Q6UXT9 468 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 EEPD1Q7L9B9 569 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 KCTD17Q8N5Z5 321 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 NEK9Q8TD19 979 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 AFAP1L1Q8TED9 768 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 SYMPKQ92797 1274 aaKnown RBP11.88□□□□□ -0.51
VPS33A-204ENST00000540669 ARMC5Q96C12 935 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 PCYT2Q99447 389 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 GPR20Q99678 358 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 POLR3CQ9BUI4 534 aaPredicted RBP11.88□□□□□ -0.51
VPS33A-204ENST00000540669 SLC9A2Q9UBY0 812 aa11.88□□□□□ -0.51
VPS33A-204ENST00000540669 WDR64B1ANS9 1081 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 DUSP11O75319 330 aaKnown RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 TXNP10599 105 aaKnown RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 RPA1P27694 616 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 CST5P28325 142 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 JAK3P52333 1124 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 GJA9P57773 515 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 ACTR2P61160 394 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 GRB10Q13322 594 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 SNW1Q13573 536 aaKnown RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 EPHA7Q15375 998 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 LY6KQ17RY6 165 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 TMEM266Q2M3C6 531 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 HSDL1Q3SXM5 330 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 PRAMEF19Q5SWL8 479 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 GJC2Q5T442 439 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 CCSAPQ6IQ19 270 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 FMR1NBQ8N0W7 255 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 PPTC7Q8NI37 304 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 MRPS27Q92552 414 aaKnown RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 COPS5Q92905 334 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 PNMA5Q96PV4 448 aa11.87□□□□□ -0.51
VPS33A-204ENST00000540669 PAK6Q9NQU5 681 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 WRAP73Q9P2S5 460 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 ZHX1Q9UKY1 873 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-204ENST00000540669 SYNRGQ9UMZ2 1314 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 DDX11L8A8MPP1 907 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 ZNF862O60290 1169 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 MED24O75448 989 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 GH1P01241 217 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 SUPT20HL2P0C7V6 817 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 PFKFB1P16118 471 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 CCND3P30281 292 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-204ENST00000540669 TECP42680 631 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 TNFAIP2Q03169 654 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 LAMC2Q13753 1193 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 ECM1Q16610 540 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 UGCGQ16739 394 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 LHX8Q68G74 356 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 CYFIP1Q7L576 1253 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 CCDC60Q8IWA6 550 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-204ENST00000540669 GPT2Q8TD30 523 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 LENG1Q96BZ8 264 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-204ENST00000540669 EPSTI1Q96J88 318 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 SDF4Q9BRK5 362 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 RAB34Q9BZG1 259 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms