RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 GJC2Q5T442 439 aaPredicted RBP21.29■■□□□ 1
TNFRSF1A-213ENST00000540022 MRPS27Q92552 414 aaKnown RBP21.29■■□□□ 1
TNFRSF1A-213ENST00000540022 MMTAG2Q9BU76 263 aaKnown RBP21.29■■□□□ 1
TNFRSF1A-213ENST00000540022 TELO2Q9Y4R8 837 aa21.29■■□□□ 1
TNFRSF1A-213ENST00000540022 ADCY6O43306 1168 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 FARP2O94887 1054 aaPredicted RBP21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 CYBAP13498 195 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 MAP3K21Q5TCX8 1036 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 IQSEC1Q6DN90 963 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 JPH1Q9HDC5 661 aaPredicted RBP21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 SLC9A2Q9UBY0 812 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 NRBP1Q9UHY1 535 aa21.28■■□□□ 1
TNFRSF1A-213ENST00000540022 FAM237AA0A1B0GTK4 181 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 PFKFB1P16118 471 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 SMPD1P17405 629 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 CCND3P30281 292 aaPredicted RBP21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 KRT76Q01546 638 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 SP4Q02446 784 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 CELF3Q5SZQ8 465 aaKnown RBP21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 GIMAP8Q8ND71 665 aaPredicted RBP21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 CCSER1Q9C0I3 900 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 RNF208Q9H0X6 261 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 UNC93B1Q9H1C4 597 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 HPSEQ9Y251 543 aa21.27■■□□□ 1
TNFRSF1A-213ENST00000540022 MCM3APO60318 1980 aa21.27■□□□□ 0.99
TNFRSF1A-213ENST00000540022 LIG1P18858 919 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 UBA7P41226 1012 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 NDUFA8P51970 172 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 DUSP28Q4G0W2 176 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ZNF746Q6NUN9 644 aaPredicted RBP21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 METTL7BQ6UX53 244 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CABP7Q86V35 215 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 DHX37Q8IY37 1157 aaKnown RBP21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GPT2Q8TD30 523 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SNX29Q8TEQ0 813 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 MLXIPQ9HAP2 919 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 FAM13BQ9NYF5 915 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 TCEAL9Q9UHQ7 104 aa21.26■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GJB1P08034 283 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 TNFAIP2Q03169 654 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 EPHA7Q15375 998 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 KRT79Q5XKE5 535 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 MIER3Q7Z3K6 550 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 DISC1Q9NRI5 854 aa21.25■□□□□ 0.99
TNFRSF1A-213ENST00000540022 A0A087X0B3 334 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GH1P01241 217 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PTMSP20962 102 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SFNP31947 248 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GJA8P48165 433 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 JAK3P52333 1124 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ACTR2P61160 394 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ARHGAP1Q07960 439 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 KARSQ15046 597 aaKnown RBP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ENGASEQ8NFI3 743 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 EIF2AK1Q9BQI3 630 aaKnown RBP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PANK2Q9BZ23 570 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 KCNH3Q9ULD8 1083 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 FAM184BQ9ULE4 1060 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GNEQ9Y223 722 aaKnown RBP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SAMM50Q9Y512 469 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 WDR64B1ANS9 1081 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 NKRFO15226 690 aaKnown RBP eCLIP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 MED24O75448 989 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 TXLNAP40222 546 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CCT6AP40227 531 aaKnown RBP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 HSDL1Q3SXM5 330 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CCDC73Q6ZRK6 1079 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PDILTQ8N807 584 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ERMNQ8TAM6 284 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 LENG1Q96BZ8 264 aaPredicted RBP21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 HSD17B14Q9BPX1 270 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 RGL1Q9NZL6 768 aa21.24■□□□□ 0.99
TNFRSF1A-213ENST00000540022 KIAA1217Q5T5P2 1943 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 NR1I2O75469 434 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SPATA31C1P0DKV0 1188 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 AKR1A1P14550 325 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 FAM160A1Q05DH4 1040 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SNW1Q13573 536 aaKnown RBP21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ZRSR1Q15695 479 aaKnown RBP21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ECM1Q16610 540 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 HAUS3Q68CZ6 603 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ABHD15Q6UXT9 468 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CATSPER3Q86XQ3 398 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SMAP1Q8IYB5 467 aaPredicted RBP21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 FMR1NBQ8N0W7 255 aaPredicted RBP21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 RDM1Q8NG50 284 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 DYDC2Q96IM9 177 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SPATA33Q96N06 139 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PNMA5Q96PV4 448 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PLIN2Q99541 437 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PAK6Q9NQU5 681 aaPredicted RBP21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 PCDHA10Q9Y5I2 948 aa21.23■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GSTTP1A0A1W2PQM5 241 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 ATG7O95352 703 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 RPA1P27694 616 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CNGA1P29973 690 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 SYKP43405 635 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 CYP4A11Q02928 519 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 GRB10Q13322 594 aa21.22■□□□□ 0.99
TNFRSF1A-213ENST00000540022 LAMC2Q13753 1193 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms