RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 PTGISQ16647 500 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 INF2Q27J81 1249 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 PRR16Q569H4 304 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 MFSD5Q6N075 450 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 TEX2Q8IWB9 1127 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 BICD2Q8TD16 824 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 TNFRSF25Q93038 417 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 LRCH3Q96II8 777 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 CDHR1Q96JP9 859 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 HIPK3Q9H422 1215 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 TUT1Q9H6E5 874 aaKnown RBP12.19□□□□□ -0.46
HMGA2-209ENST00000539662 JPH1Q9HDC5 661 aaPredicted RBP12.19□□□□□ -0.46
HMGA2-209ENST00000539662 SLC9A2Q9UBY0 812 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 GTF2IRD1Q9UHL9 959 aa12.19□□□□□ -0.46
HMGA2-209ENST00000539662 WDR81Q562E7 1941 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 MSH4O15457 936 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 MAFGO15525 162 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 SMIM10L2AP0DMW4 78 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 SMIM10L2BP0DMW5 78 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 MARK3P27448 753 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 ACTR2P61160 394 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 GPNMBQ14956 572 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 KRT40Q6A162 431 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 NIPA1Q7RTP0 329 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 SESTD1Q86VW0 696 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 TDHQ8IZJ6 230 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 C7orf31Q8N865 590 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 SEPT1Q8WYJ6 367 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.18□□□□□ -0.463e-17■□□□□ 9.6
HMGA2-209ENST00000539662 OSBPL7Q9BZF2 842 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 SETD4Q9NVD3 440 aa12.18□□□□□ -0.46
HMGA2-209ENST00000539662 TET1Q8NFU7 2136 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 NFASCO94856 1347 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 TANC1Q9C0D5 1861 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 BTBD18B2RXH4 712 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 IPO5O00410 1097 aaKnown RBP12.17□□□□□ -0.46
HMGA2-209ENST00000539662 TREHO43280 583 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 SLC37A4O43826 429 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 HOXC8P31273 242 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 FPGSQ05932 587 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 PTPN11Q06124 597 aaPredicted RBP12.17□□□□□ -0.46
HMGA2-209ENST00000539662 TRIM71Q2Q1W2 868 aaKnown RBP12.17□□□□□ -0.46
HMGA2-209ENST00000539662 PIK3AP1Q6ZUJ8 805 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 GIMAP8Q8ND71 665 aaPredicted RBP12.17□□□□□ -0.46
HMGA2-209ENST00000539662 ZNF577Q9BSK1 485 aa12.17□□□□□ -0.46
HMGA2-209ENST00000539662 LGR5O75473 907 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 ATG7O95352 703 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 MMP1P03956 469 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 ATP4AP20648 1035 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 USP11P51784 963 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 NONOQ15233 471 aaKnown RBP eCLIP12.16□□□□□ -0.46
HMGA2-209ENST00000539662 TCTN1Q2MV58 587 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 TMEM240Q5SV17 173 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 MCTP2Q6DN12 878 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 FAM109BQ6ICB4 259 aaPredicted RBP12.16□□□□□ -0.46
HMGA2-209ENST00000539662 GALNT17Q6IS24 598 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 TRAF7Q6Q0C0 670 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 ABHD15Q6UXT9 468 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 KRT25Q7Z3Z0 450 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 CCDC60Q8IWA6 550 aaPredicted RBP12.16□□□□□ -0.46
HMGA2-209ENST00000539662 TRAPPC12Q8WVT3 735 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 TMX3Q96JJ7 454 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 ZSCAN31Q96LW9 406 aaPredicted RBP12.16□□□□□ -0.46
HMGA2-209ENST00000539662 MBOAT7Q96N66 472 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 SDF4Q9BRK5 362 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 KATNAL1Q9BW62 490 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 SEZ6LQ9BYH1 1024 aa12.16□□□□□ -0.46
HMGA2-209ENST00000539662 CYP3A7-CYP3A51PA0A087WV96 503 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 IGKV6D-21A0A0A0MT36 114 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 C17orf102A2RUQ5 167 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 IQCF3P0C7M6 154 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 SUPT20HL2P0C7V6 817 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 CYP3A7P24462 503 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 KRT2P35908 639 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 ADAM17P78536 824 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 MBTPS1Q14703 1052 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 PLCB4Q15147 1175 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 LETM2Q2VYF4 491 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 Q4G0T1 1027 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 MARCH8Q5T0T0 291 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 RUFY4Q6ZNE9 571 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 ZNF365Q70YC5 407 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 DEFB128Q7Z7B8 93 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 DIS3L2Q8IYB7 885 aaKnown RBP12.15□□□□□ -0.46
HMGA2-209ENST00000539662 ETNPPLQ8TBG4 499 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 LMBR1Q8WVP7 490 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 WASF1Q92558 559 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 GLG1Q92896 1179 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 SLC5A5Q92911 643 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 UPF2Q9HAU5 1272 aaKnown RBP12.15□□□□□ -0.46
HMGA2-209ENST00000539662 SH2B1Q9NRF2 756 aaPredicted RBP12.15□□□□□ -0.46
HMGA2-209ENST00000539662 CXXC1Q9P0U4 656 aaPredicted RBP12.15□□□□□ -0.46
HMGA2-209ENST00000539662 NOD1Q9Y239 953 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 SIP14410 1827 aa12.15□□□□□ -0.46
HMGA2-209ENST00000539662 EMSYQ7Z589 1322 aa12.14□□□□□ -0.47
HMGA2-209ENST00000539662 CCDC194A0A1B0GVG4 234 aa12.14□□□□□ -0.47
HMGA2-209ENST00000539662 A0A1W2PPC1 479 aa12.14□□□□□ -0.47
HMGA2-209ENST00000539662 KIF28PB7ZC32 967 aa12.14□□□□□ -0.47
HMGA2-209ENST00000539662 CHMP2AO43633 222 aa12.14□□□□□ -0.47
HMGA2-209ENST00000539662 CKBP12277 381 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms