RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 HOXD11P31277 338 aaPredicted RBP15.65■□□□□ 0.1
SS18-204ENST00000539244 MB21D2Q8IYB1 491 aaPredicted RBP15.65■□□□□ 0.1
SS18-204ENST00000539244 GJD3Q8N144 294 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 GIMAP8Q8ND71 665 aaPredicted RBP15.65■□□□□ 0.1
SS18-204ENST00000539244 BANK1Q8NDB2 785 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 MTA3Q9BTC8 594 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 IFIH1Q9BYX4 1025 aaKnown RBP15.65■□□□□ 0.1
SS18-204ENST00000539244 EHMT1Q9H9B1 1298 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 TELO2Q9Y4R8 837 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 C5orf67F2Z3F1 127 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 IL9P15248 144 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 KIF5BP33176 963 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 ARHGAP4P98171 946 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 GPM6BQ13491 265 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 PTCRAQ6ISU1 281 aaPredicted RBP15.64■□□□□ 0.09
SS18-204ENST00000539244 TAF2Q6P1X5 1199 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 USP17L6PQ6QN14 398 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 NLRX1Q86UT6 975 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 ZNF654Q8IZM8 581 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 SMARCC2Q8TAQ2 1214 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 MAP4K1Q92918 833 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 CUL5Q93034 780 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 GPRASP2Q96D09 838 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 PABPC5Q96DU9 382 aaKnown RBP15.64■□□□□ 0.09
SS18-204ENST00000539244 RRP36Q96EU6 259 aaKnown RBP15.64■□□□□ 0.09
SS18-204ENST00000539244 RC3H2Q9HBD1 1191 aaKnown RBP15.64■□□□□ 0.09
SS18-204ENST00000539244 LY9Q9HBG7 655 aa15.64■□□□□ 0.09
SS18-204ENST00000539244 MYO7AQ13402 2215 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 ATG2AQ2TAZ0 1938 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 UPP2O95045 317 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 CHRNA1P02708 482 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 LINC00271P0C7V0 271 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 KCNA2P16389 499 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 MGAT3Q09327 533 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 UTP14CQ5TAP6 766 aaKnown RBP15.63■□□□□ 0.09
SS18-204ENST00000539244 CTCFLQ8NI51 663 aaPredicted RBP15.63■□□□□ 0.09
SS18-204ENST00000539244 CDHR1Q96JP9 859 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 LZTS2Q9BRK4 669 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 NSUN3Q9H649 340 aaKnown RBP15.63■□□□□ 0.09
SS18-204ENST00000539244 TTC3P53804 2025 aa15.63■□□□□ 0.09
SS18-204ENST00000539244 MBLAC1A4D2B0 266 aaPredicted RBP15.62■□□□□ 0.09
SS18-204ENST00000539244 RB1P06400 928 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 TCF7P36402 384 aaPredicted RBP15.62■□□□□ 0.09
SS18-204ENST00000539244 GNAQP50148 359 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 TCEAL5Q5H9L2 206 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 PIBF1Q8WXW3 757 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 IL17RAQ96F46 866 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 SEC63Q9UGP8 760 aaKnown RBP15.62■□□□□ 0.09
SS18-204ENST00000539244 RWDD3Q9Y3V2 267 aa15.62■□□□□ 0.09
SS18-204ENST00000539244 FAM86C2PA6NEL3 165 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 PRR33A8MZF0 331 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 NCK2O43639 380 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 ATP9AO75110 1047 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 SP4Q02446 784 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 RUFY4Q6ZNE9 571 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 FIBCD1Q8N539 461 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 SEPT1Q8WYJ6 367 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 CLP1Q92989 425 aaKnown RBP15.61■□□□□ 0.09
SS18-204ENST00000539244 MYL10Q9BUA6 226 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 LMAN2LQ9H0V9 348 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 ERAP1Q9NZ08 941 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 ADGRA3Q8IWK6 1321 aa15.61■□□□□ 0.09
SS18-204ENST00000539244 GSTTP1A0A1W2PQM5 241 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 H3BQ06 376 aaPredicted RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 MAFGO15525 162 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 RPLP2P05387 115 aaKnown RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 GHRP10912 638 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 ALADP13716 330 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 ITGB5P18084 799 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 BMPR1AP36894 532 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 PPFIA1Q13136 1202 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 LPIN1Q14693 890 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 GRIK4Q16099 956 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 FBXO47Q5MNV8 452 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 RSPH3Q86UC2 560 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 TMTC2Q8N394 836 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 SRBD1Q8N5C6 995 aaKnown RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 ZNF689Q96CS4 500 aaPredicted RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 C11orf84Q9BUA3 381 aaPredicted RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 PSTPIP2Q9H939 334 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 PRKAG3Q9UGI9 489 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 TUBE1Q9UJT0 475 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 FAM50BQ9Y247 325 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 SUPT16HQ9Y5B9 1047 aaKnown RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 RBM8AQ9Y5S9 174 aaKnown RBP15.6■□□□□ 0.09
SS18-204ENST00000539244 UBIAD1Q9Y5Z9 338 aa15.6■□□□□ 0.09
SS18-204ENST00000539244 SH2B2O14492 632 aaPredicted RBP15.59■□□□□ 0.09
SS18-204ENST00000539244 ENPP3O14638 875 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 PLEKHA8P1O95397 391 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 SSTR3P32745 418 aaPredicted RBP15.59■□□□□ 0.09
SS18-204ENST00000539244 CTNNB1P35222 781 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 LTBRP36941 435 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 LIFRP42702 1097 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 CTC1Q2NKJ3 1217 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 MARCH8Q5T0T0 291 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 CASC1Q6TDU7 716 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 TMEM87BQ96K49 555 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 SMARCAD1Q9H4L7 1026 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 SQORQ9Y6N5 450 aa15.59■□□□□ 0.09
SS18-204ENST00000539244 MUC6Q6W4X9 2439 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms