RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CREB3L3Q68CJ9 461 aa4.34□□□□□ -1.71
CD44-229ENST00000528672 ZCCHC8Q6NZY4 707 aaKnown RBP4.34□□□□□ -1.71
CD44-229ENST00000528672 FAM26EQ8N5C1 309 aa4.34□□□□□ -1.71
CD44-229ENST00000528672 CLEC4DQ8WXI8 215 aa4.34□□□□□ -1.71
CD44-229ENST00000528672 RELTQ969Z4 430 aa4.34□□□□□ -1.71
CD44-229ENST00000528672 TRMT2BQ96GJ1 504 aaKnown RBP4.34□□□□□ -1.71
CD44-229ENST00000528672 ASPSCR1Q9BZE9 553 aa4.34□□□□□ -1.71
CD44-229ENST00000528672 CCDC8Q9H0W5 538 aaPredicted RBP4.34□□□□□ -1.71
CD44-229ENST00000528672 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.33□□□□□ -1.72
CD44-229ENST00000528672 B4E1Z4 1266 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 NEMP1O14524 444 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 GPR39O43194 453 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 NPHS1O60500 1241 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MPOP05164 745 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 ATP2A2P16615 1042 aaKnown RBP4.33□□□□□ -1.72
CD44-229ENST00000528672 MC3RP41968 323 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 SCNN1BP51168 640 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 CYP4F8P98187 520 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MCL1Q07820 350 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 KCNAB2Q13303 367 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MTMR1Q13613 665 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 STAT4Q14765 748 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 NR1I3Q14994 352 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 TMEM177Q53S58 311 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 ADGRF1Q5T601 910 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 E4F1Q66K89 784 aaPredicted RBP4.33□□□□□ -1.72
CD44-229ENST00000528672 BICRALQ6AI39 1079 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MAMDC2Q7Z304 686 aaPredicted RBP4.33□□□□□ -1.72
CD44-229ENST00000528672 STK32CQ86UX6 486 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 CILP2Q8IUL8 1156 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 LZTR1Q8N653 840 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 ARRDC4Q8NCT1 418 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MORC4Q8TE76 937 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 USP33Q8TEY7 942 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 CHTF18Q8WVB6 975 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 USP7Q93009 1102 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 MTMR8Q96EF0 704 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 TMEM169Q96HH4 297 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 GPR101Q96P66 508 aaPredicted RBP4.33□□□□□ -1.72
CD44-229ENST00000528672 TTC1Q99614 292 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 SGPP1Q9BX95 441 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 PDLIM7Q9NR12 457 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 CATSPERZQ9NTU4 200 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 SPTLC3Q9NUV7 552 aa4.33□□□□□ -1.72
CD44-229ENST00000528672 SHTN1A0MZ66 631 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 FAM90A27PA6NNH2 459 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 NFIBO00712 420 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 MAN2B1O00754 1011 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 DBHP09172 617 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 GLI4P10075 376 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 PTX3P26022 381 aaPredicted RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 ADCYAP1R1P41586 468 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 RAP1GAPP47736 663 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 RAB27AP51159 221 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 MECP2P51608 486 aaKnown RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 NEK2P51955 445 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 PAK1Q13153 545 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 IQCEQ6IPM2 695 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 LILRA6Q6PI73 481 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 RPTNQ6XPR3 784 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 SYDE1Q6ZW31 735 aaPredicted RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 SPATS2Q86XZ4 545 aaKnown RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 EXOC8Q8IYI6 725 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 CHPFQ8IZ52 775 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 OR2W6PQ8NHA6 318 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.32□□□□□ -1.72
CD44-229ENST00000528672 WNK4Q96J92 1243 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 PKNOX2Q96KN3 472 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 SMAD5Q99717 465 aaKnown RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 PUS7LQ9H0K6 701 aaKnown RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 IFT22Q9H7X7 185 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.32□□□□□ -1.72
CD44-229ENST00000528672 CD320Q9NPF0 282 aa4.32□□□□□ -1.72
CD44-229ENST00000528672 THG1LQ9NWX6 298 aaKnown RBP4.32□□□□□ -1.72
CD44-229ENST00000528672 RASSF10A6NK89 507 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 ZNF561-AS1K7EIQ3 104 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 ACOT7O00154 380 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 CBX4O00257 560 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 SCDO00767 359 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 AQP7O14520 342 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 PRRG2O14669 202 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 TGM5O43548 720 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 ZEB2O60315 1214 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 CAND2O75155 1236 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 SCGB1D2O95969 90 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 KRT1P04264 644 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 CYBBP04839 570 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 TMEM253P0C7T8 217 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 ZBTB48P10074 688 aaPredicted RBP4.31□□□□□ -1.72
CD44-229ENST00000528672 SLC9A1P19634 815 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 PDE6BP35913 854 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 STAT5AP42229 794 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 MAPKAPK2P49137 400 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 TMPRSS15P98073 1019 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 SART3Q15020 963 aaKnown RBP4.31□□□□□ -1.72
CD44-229ENST00000528672 LRRC41Q15345 812 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 CCSAPQ6IQ19 270 aaPredicted RBP4.31□□□□□ -1.72
CD44-229ENST00000528672 ARHGAP36Q6ZRI8 547 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 PASD1Q8IV76 773 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 MYO1HQ8N1T3 1032 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms