RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 TOP1MTQ969P6 601 aa12.65□□□□□ -0.38
NEDD8-204ENST00000526430 GMCL1Q96IK5 515 aa12.65□□□□□ -0.38
NEDD8-204ENST00000526430 UBAC1Q9BSL1 405 aa12.65□□□□□ -0.38
NEDD8-204ENST00000526430 FAM217BQ9NTX9 383 aaPredicted RBP12.65□□□□□ -0.38
NEDD8-204ENST00000526430 TTC3P53804 2025 aa12.65□□□□□ -0.38
NEDD8-204ENST00000526430 KAT6AQ92794 2004 aa12.65□□□□□ -0.38
NEDD8-204ENST00000526430 FANCMQ8IYD8 2048 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 PLXNA4Q9HCM2 1894 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 MED19A0JLT2 244 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 PALM3A6NDB9 673 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 HMGB1P09429 215 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 PSMA5P28066 241 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 ICAM3P32942 547 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 ZNF543Q08ER8 600 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 COASYQ13057 564 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 WTAPQ15007 396 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 IFIT1BQ5T764 474 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 ZNF618Q5T7W0 954 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 BTNL9Q6UXG8 535 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 NSMFQ6X4W1 530 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 KAT2BQ92831 832 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 NKD2Q969F2 451 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 PURBQ96QR8 312 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 LARP6Q9BRS8 491 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 C11orf84Q9BUA3 381 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 MYL10Q9BUA6 226 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 RWDD3Q9Y3V2 267 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 MYH6P13533 1939 aa12.64□□□□□ -0.39
NEDD8-204ENST00000526430 MAP1BP46821 2468 aaKnown RBP12.64□□□□□ -0.39
NEDD8-204ENST00000526430 FRYLO94915 3013 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 MMP3P08254 477 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 EDNRBP24530 442 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 PLEKHG4Q58EX7 1191 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 PPP4R3BQ5MIZ7 849 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 KCTD1Q719H9 257 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 ZNF654Q8IZM8 581 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 ADSSL1Q8N142 457 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 DBF4BQ8NFT6 615 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 MPHOSPH6Q99547 160 aaKnown RBP12.63□□□□□ -0.39
NEDD8-204ENST00000526430 PHF7Q9BWX1 381 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-204ENST00000526430 CPVLQ9H3G5 476 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 MAD2L2Q9UI95 211 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 CYP46A1Q9Y6A2 500 aa12.63□□□□□ -0.39
NEDD8-204ENST00000526430 GRM6O15303 877 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 LINC01565O15544 149 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 MMP1P03956 469 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 ICAM1P05362 532 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 LINC00271P0C7V0 271 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 GOLGA8HP0CJ92 632 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 TXNP10599 105 aaKnown RBP12.62□□□□□ -0.39
NEDD8-204ENST00000526430 CTNNB1P35222 781 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 NDUFV1P49821 464 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 BAATQ14032 418 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-204ENST00000526430 GRM4Q14833 912 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 PTPN21Q16825 1174 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 APOA5Q6Q788 366 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 RAB11FIP4Q86YS3 637 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 TMTC2Q8N394 836 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 DCAF4Q8WV16 495 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 COPS5Q92905 334 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 BRF1Q92994 677 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 RIPOR3Q96MK2 946 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 KAT14Q9H8E8 782 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 PDRG1Q9NUG6 133 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 CCPG1Q9ULG6 757 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 MTMR7Q9Y216 660 aa12.62□□□□□ -0.39
NEDD8-204ENST00000526430 FRMPD2Q68DX3 1309 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-204ENST00000526430 CYTH3O43739 400 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 CD2BP2O95400 341 aaKnown RBP12.61□□□□□ -0.39
NEDD8-204ENST00000526430 RXRAP19793 462 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 CDC27P30260 824 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 GTF2F1P35269 517 aaKnown RBP eCLIP12.61□□□□□ -0.39
NEDD8-204ENST00000526430 SLC16A2P36021 539 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 BMPR1AP36894 532 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 SLC1A4P43007 532 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 CHMP4BP1P59074 171 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 PDE4DQ08499 809 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 FUT2Q10981 343 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 IKQ13123 557 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-204ENST00000526430 EFHBQ8N7U6 833 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 C7orf31Q8N865 590 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 WNT8BQ93098 351 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 PPP2R3CQ969Q6 453 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 MAP3K14Q99558 947 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 KATNAL1Q9BW62 490 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 UBA5Q9GZZ9 404 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 GPCPD1Q9NPB8 672 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 CLEC1BQ9P126 229 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 HDAC6Q9UBN7 1215 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 PRR12Q9ULL5 1215 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 OTOGLQ3ZCN5 2332 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 CFAP47Q6ZTR5 3102 aa12.61□□□□□ -0.39
NEDD8-204ENST00000526430 ZFHX4Q86UP3 3567 aa12.6□□□□□ -0.39
NEDD8-204ENST00000526430 ATF7P17544 494 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-204ENST00000526430 PDIA3P30101 505 aaKnown RBP12.6□□□□□ -0.39
NEDD8-204ENST00000526430 NEK4P51957 841 aa12.6□□□□□ -0.39
NEDD8-204ENST00000526430 AK2P54819 239 aa12.6□□□□□ -0.39
NEDD8-204ENST00000526430 ST3GAL1Q11201 340 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms